DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment GluRIIE and gria1

DIOPT Version :9

Sequence 1:NP_001036733.1 Gene:GluRIIE / 318623 FlyBaseID:FBgn0051201 Length:897 Species:Drosophila melanogaster
Sequence 2:XP_004912781.1 Gene:gria1 / 100127569 XenbaseID:XB-GENE-995621 Length:903 Species:Xenopus tropicalis


Alignment Length:858 Identity:292/858 - (34%)
Similarity:450/858 - (52%) Gaps:83/858 - (9%)


- Green bases have known domain annotations that are detailed below.


  Fly    17 ISVNWAQYENFGG-YDNYQSLESVPIGLLTDQNTEQMNIVFDHAIDVANQEVGTSLTSLKEEVNY 80
            :.||:..:...|| :.|.||.|.........|.:|...::  ..||:               ||.
 Frog    17 LGVNFPNHIQIGGLFPNQQSQEHAAFRFALSQLSEPPKLL--PQIDI---------------VNI 64

  Fly    81 GDAYQSYGKLCRMLETGIAGVFGPSSRHTAVHLMSICDAMDIPHIY-SYMSENAEGFNLHPHPAD 144
            .|:::.....|.....|:..:||...|.|...|.|.|.|:.:..|. |:....:..|.|...| :
 Frog    65 SDSFEMTYTFCSQFSKGVYAIFGFYDRKTVNMLTSFCGALHVCFITPSFPVATSNQFVLQLRP-E 128

  Fly   145 LAKALYSLITEFNWTRFIFLYESAEYLNILNELTTMLGKSGTVITVLRYDMQLNGNYKQVLRRVR 209
            |..||.|:|..:.|.:|:::|::...|::|.::.....:....:|.:.........|:.:.:.:.
 Frog   129 LQDALISVIEYYKWKKFVYIYDADRGLSVLQKVLDTAAEKNWQVTAVNILTTTEEGYRLLFQDLD 193

  Fly   210 KSVDNRIVVVGSSETMPEFLNQA---QQVGIINEDYKYIIGNLDFHSFDLEEYKYSEANITGLRL 271
            ||.|.:||:...||.:...|.|.   .:..||.  |.||:.||.|...|::::|.:.||:||.:|
 Frog   194 KSKDRQIVIDCESERLNAILTQVVVKLEKNIIG--YHYILANLGFMDIDMQKFKEAGANVTGFQL 256

  Fly   272 FSPEKMAVKELLMKLGYPTDQDEFRNGSCPITVEMALTYDAVQLFAQTLKNLPFKPMPQNCSQRT 336
            .:.....|..::.:......:::.|..........|||||.|::.|:..::|.        .||.
 Frog   257 VNYTDTMVSRIMQQWKNYDGREQPRVDWKKPKYTSALTYDGVRVMAEAFQSLR--------KQRI 313

  Fly   337 ESVR---------------DDGSSFKNYMRTLRLTDRLLTGPIYF-EGNVRKGYHLDVIELQPSG 385
            :..|               ..|...:..::.:||..  |:|.:.| |...|..|.|.|:||:..|
 Frog   314 DISRRGNAGDCLANPAVPWGQGIDIQRALQQVRLEG--LSGNVQFNEKGRRTNYTLHVLELKHEG 376

  Fly   386 IVKVGTWDEDRQYRPQRLAP--TTAQFDSVDNSLANKTFIILLSVPNKPYAQLVETYKQLEGNSQ 448
            |..:..|:||     .:|.|  |.||..:....:.|:|:|: .::...||..|.:...|||||.:
 Frog   377 IRHIAHWNED-----DKLIPLATDAQAGNDTIGVQNRTYIV-TTILEAPYVMLKKNADQLEGNDR 435

  Fly   449 YEGYGVDLIKELADKLGFNF--TFVNGGNDYGSYNKSTNESTGMLREIMTGRADLAITDLTITSE 511
            :|||.|:|..|:|..:||.:  ..|..|. ||:.:.......||:.|::.||||||:..||||..
 Frog   436 FEGYCVELAAEIAKHVGFKYKLEIVKDGK-YGARDSDMKAWNGMVGELVYGRADLAVAPLTITLV 499

  Fly   512 REQALDFTIPFMNLGIAILYLKPQKATPELFTFMDPFSEEVWWFLGFSFLGVSLSFFILGRLSPS 576
            ||:.:||:.|||:|||:|:..||||:.|.:|:|:||.:.|:|..:.|:::|||:..|::.|.||.
 Frog   500 REEVIDFSKPFMSLGISIMIKKPQKSKPGVFSFLDPLAYEIWMCIVFAYIGVSVVLFLVSRFSPY 564

  Fly   577 EWDNPYPCIEEPEE--------LENQFTLGNSIWFTTGALLQQGSEIGPKALSTRTVASFWWFFT 633
            ||.|     ||.||        ..|:|.:.||:||:.||.:|||.:|.|::||.|.|...|||||
 Frog   565 EWHN-----EEFEEGKEQPTTDQSNEFGIFNSLWFSLGAFMQQGCDISPRSLSGRIVGGVWWFFT 624

  Fly   634 LIVVSSYTANLAAFLTIEKPQSLINSVDDLADNKDGVVYGAKKTGSTRNFFMTSAEERYKKMNKF 698
            ||::||||||||||||:|:..|.|.|.||||...: :.||...:|||:.||..|....::||..:
 Frog   625 LIIISSYTANLAAFLTVERMVSPIESADDLAKQTE-IAYGTLDSGSTKEFFKRSKIAVFEKMWTY 688

  Fly   699 M-SENPQYLTEDNMEGVNRV-KTNTHYAFLMESTSIEYNTKRE-CNLKKIGDALDEKGYGIAMRK 760
            | |..|....:...||:||| |:...||:|:|||..||..:|: |:..|:|..||.||||||..|
 Frog   689 MRSAEPSVFVKTTEEGMNRVRKSKGKYAYLLESTMNEYIEQRKPCDTMKVGGNLDSKGYGIATPK 753

  Fly   761 DWPHRGKFNNALLELQEQGVLEKMKNKWWNEVGTGICATKED-APDAT-PLDMNNLEGVFFVLLV 823
            ..|.||..|.|:|:|.|||||:|:|:|||.:.|.  |.:|:. :.|.| .|.::|:.|||::|:.
 Frog   754 GSPLRGAVNLAVLKLSEQGVLDKLKSKWWYDKGE--CGSKDSGSKDKTSALSLSNVAGVFYILIG 816

  Fly   824 GSCCALLYGIISW 836
            |...|:|..:|.:
 Frog   817 GLGLAMLVALIEF 829

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GluRIIENP_001036733.1 PBP1_iGluR_Kainate 42..396 CDD:107377 88/373 (24%)
ANF_receptor 51..382 CDD:279440 81/350 (23%)
PBP2_iGluR_Kainate 419..790 CDD:270432 174/383 (45%)
Lig_chan 551..824 CDD:278489 129/285 (45%)
gria1XP_004912781.1 PBP1_iGluR_AMPA_GluR1 26..393 CDD:380613 97/401 (24%)
PBP2_iGluR_AMPA_GluR1 407..788 CDD:270447 176/390 (45%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000021
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.000

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