DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment GluRIIE and grid1

DIOPT Version :9

Sequence 1:NP_001036733.1 Gene:GluRIIE / 318623 FlyBaseID:FBgn0051201 Length:897 Species:Drosophila melanogaster
Sequence 2:NP_001096470.1 Gene:grid1 / 100125089 XenbaseID:XB-GENE-990290 Length:1009 Species:Xenopus tropicalis


Alignment Length:876 Identity:221/876 - (25%)
Similarity:396/876 - (45%) Gaps:122/876 - (13%)


- Green bases have known domain annotations that are detailed below.


  Fly    39 VPIGLLTDQNTEQMNIVFDHAI-DVA-NQEVGTSLTSLKEEVNY-------GDAYQSYGKLCRML 94
            :.||.:.::|..:.:.||..|: |:: |.::..|     |::.|       .:.:|:..:.|.::
 Frog    24 IHIGAIFEENAVKDDEVFQLAVSDLSLNDDILQS-----EKITYSIKFIEANNPFQAVQEACDLM 83

  Fly    95 ETGIAGVFGPSSRHTAVHLMSICDAMDIPHIYSYMSENAEG-------FNLHPH----------P 142
            ..||..:...:...:|..|.|:.|||.||||  ::..|:.|       ||..|.          |
 Frog    84 TQGILALVTSTGCASANALQSLTDAMHIPHI--FVQRNSGGSPRTVCQFNPSPEGEEYTLAARPP 146

  Fly   143 ADLAKALYSLITEFNWTRFIFLYESAEYLNILNELTTMLGKSGTVITVLRYDMQLN--------- 198
            ..|...:..|:||..|.:||..|:|...:..|........:.|..:::.:.|..::         
 Frog   147 VRLNDVMLKLVTELRWQKFIVFYDSDYDIRGLQGFLDQASRLGLDVSLQKVDRNISRVFATLFTS 211

  Fly   199 ------GNYKQVLRRVRKSVDNRIVVVGSSETMPEFLNQAQQVGIINEDYKYIIGNLDFHSFDLE 257
                  ..|:..|||.        :::.|......|:::|.:..:.::|..::..|.:.:..::.
 Frog   212 MKTEELNRYRDTLRRA--------ILLLSPRGAQSFISEAVETNLASKDSHWVYVNEEINDAEIV 268

  Fly   258 EYKYSE-ANITGLRLFSPEKMAVKELLMKLGYPTDQDEFRNGSCP----------ITVEMALTYD 311
            |..:|. ..||.:|...|   ::|:..::    ..::..|..|.|          :.|.....||
 Frog   269 ELVHSALGRITVIRQIFP---SLKDNNIR----CVRNNHRIASLPCDPQEGYLQMLQVSNLYLYD 326

  Fly   312 AVQL----FAQTLKNLPFKPMPQ-NCSQRTESVRDDGSSFKNYMRTLRLTDRLLTGPIYF-EGNV 370
            :|.:    |.:.|::..:..|.. ||.:::....:.|.|..:.::..|:|.  |||.:.| |...
 Frog   327 SVLMLANAFHRKLEDRKWHSMASLNCMRKSTKPWNGGRSMLDTIKKGRITG--LTGIMEFKEAGA 389

  Fly   371 RKGYHLDVI-----ELQPSGIVKVGTWDEDRQYRPQRLAPTTAQFDSVDNSLANKTFIILLSVPN 430
            ......:::     |.....:.::.|||..:.:.      .:.|...::|.|...| :.:::|..
 Frog   390 NPHVQFEILGTSYSETFGKDVRRLATWDSMKGFN------GSLQEKPLNNDLQGLT-LKVVTVLE 447

  Fly   431 KPYAQLVETYKQLEGNSQYEGYGVDLIKELADKLGFNFTFVNGGNDYGSYNKSTNESTGMLREIM 495
            :|:..:.|..  |....:|:|:.::::.||:::|||.:......:....:..|.....||:.|::
 Frog   448 EPFVMVAENI--LGQPKRYKGFSIEILDELSNRLGFKYEIYQAPDGKYGHQLSNGSWNGMIGELI 510

  Fly   496 TGRADLAITDLTITSEREQALDFTIPFMNLGIAILYLKPQKATPELFTFMDPFSEEVWWFLGFSF 560
            ..|||:||:.:|||.|||..:|||..:::..:.||..||::.. .:|:...||...||..:....
 Frog   511 NKRADIAISAITITPERENVVDFTKRYLDYSVGILIKKPEERI-NIFSLFAPFDFAVWACIAAVI 574

  Fly   561 LGVSLSFFILGRLSPSEWDNPYPCIEEPEELENQFTLGNSIWFTTGALLQQGSEIGPKALSTRTV 625
            ..|.:..|:|.|:......|     ..........||.::||...||.:|||.|....:::.|.|
 Frog   575 PVVGVLIFVLNRIQAVRAQN-----SSQTSQSTSSTLHSAIWIVYGAFVQQGGESAANSVAMRIV 634

  Fly   626 ASFWWFFTLIVVSSYTANLAAFLTIEKPQSLINSVDDLADNKDGVVYGAKKTGSTRNFFM----- 685
            ...||.|||||.||||||||||||:.:..:.|.:..|||...| :.||..|..|...:|.     
 Frog   635 MGSWWLFTLIVCSSYTANLAAFLTVSRMDNPIRTFQDLAKQVD-LPYGTVKDSSVYEYFKSKGTN 698

  Fly   686 TSAEER-YKKMNKFMSENPQYLTEDN-----MEGVNRVKTNTHYAFLMESTSIEYN--TKRECNL 742
            |..::| :.::.:.:.:|.   ..||     .||:.:.|.. :||||.:.|.:||.  |..||::
 Frog   699 TLVQDRTFAELWRTIGKNN---GSDNCVSSPSEGIRKAKRG-NYAFLWDVTVVEYAALTDDECSV 759

  Fly   743 KKIGDALDEKGYGIAMRKDWPHRGKFNNALLELQEQGVLEKMKNKWWNEVGTGICATKEDAP-DA 806
            ...|:.:..||||||::...|:|..|:..:||.|:.|.|:.:|.|||...|.....:..:|. |.
 Frog   760 AVTGNTISSKGYGIALQHGSPYRDIFSQRILEFQDSGRLDVLKEKWWPRTGRCDLNSHNNAQNDG 824

  Fly   807 TPLDMNNLEGVFFVLLVGSCCALLYGIIS-W 836
            ..|.:::..|||.:|.:|...|.|...:. |
 Frog   825 KALKLHSFAGVFCILAIGLLLACLVAALELW 855

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GluRIIENP_001036733.1 PBP1_iGluR_Kainate 42..396 CDD:107377 83/416 (20%)
ANF_receptor 51..382 CDD:279440 78/393 (20%)
PBP2_iGluR_Kainate 419..790 CDD:270432 121/383 (32%)
Lig_chan 551..824 CDD:278489 93/286 (33%)
grid1NP_001096470.1 PBP1_iGluR_delta_1 25..424 CDD:107387 84/428 (20%)
ANF_receptor 39..400 CDD:279440 77/384 (20%)
PBP2_iGluR_delta_1 437..807 CDD:270448 121/383 (32%)
Lig_chan 565..842 CDD:278489 93/286 (33%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000021
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.000

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