DRSC/TRiP Functional Genomics Resources

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Protein Alignment GluRIIE and grin2ca

DIOPT Version :9

Sequence 1:NP_001036733.1 Gene:GluRIIE / 318623 FlyBaseID:FBgn0051201 Length:897 Species:Drosophila melanogaster
Sequence 2:NP_001352716.1 Gene:grin2ca / 100003342 ZFINID:ZDB-GENE-070822-3 Length:1400 Species:Danio rerio


Alignment Length:906 Identity:207/906 - (22%)
Similarity:379/906 - (41%) Gaps:193/906 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly    98 IAGVFGPSSRHTAVHLMSIC--DAMDIPHIYSYMSENAEGFNLHPHPADLAKALYSLITEFNWTR 160
            :|.:....|..|||.::.|.  .|:.:||    ..:.:....|..........::.::.|:||..
Zfish   113 VAQILDFISTQTAVPIVGISGGSAVVLPH----KGDGSTFLQLGSSIEQQINGMFKVMEEYNWDS 173

  Fly   161 FIFL------YES-AEYLNILNELTTMLGKSGTVITVLRYDMQLNGNYKQVLRRVRKSVDNRIVV 218
            |:.:      |:: .:|:....:.:..|.:....:|   :||..:|......||:.:.:|.::::
Zfish   174 FVVVTSLYPGYDTYVDYIRSFIDTSYFLWELQDTLT---FDMSADGMNDLRARRLLQQIDAQVLL 235

  Fly   219 VGSSETMPEFL-NQAQQVGIINEDYKYIIGNLDFHSFDLEEYKYSEANITGLRLFSPEKMAVKEL 282
            |..|....::| :.|::||::...|.:.|.:|          .....||.     .|:...|.  
Zfish   236 VYCSHDEAQYLFSMAREVGLVGPGYIWFIPSL----------AVGNPNIA-----PPDSFPVG-- 283

  Fly   283 LMKLGYPTD------QDEFRNGSCPITVEMALTYDAVQLFAQTLKNL---------PFKPMPQNC 332
              .:...||      ::..|:|       :|:....|:.|.:....:         |.:|.....
Zfish   284 --LISIITDRWKMSLRNRVRDG-------VAIVVKGVESFRKQRGFIPDGHMDCLSPIRPASNGT 339

  Fly   333 SQR---TESVRDDGSSFKNYMRTLRLTDRLLTGPIYFEGNVRKGYHLDVIELQPSGIVKV----- 389
            ..|   ..|..:...||.        :|..|..|......:.:|...|.:....|||:::     
Zfish   340 LYRHMLNVSWENTDFSFN--------SDGYLVNPSMIIITLDRGRQWDKVGNYESGILQMRYPVW 396

  Fly   390 ---GTWDE---DRQY--------RP----QRLAPTTAQFDSVDNSL-----ANKTFIILLSVPNK 431
               ||:.|   |.::        ||    :.:.|.|.  ..:.|::     :|||..|:  ...:
Zfish   397 PR
YGTFLEPVSDNRHLTVATLEERPFVIVEAVDPVTG--TCLSNTVPCRRQSNKTETIV--GHTE 457

  Fly   432 PYAQLVETYKQLEGNSQYEGYGVDLIKELADKLGFNFTF---VNGGND---YGSYNKSTNESTGM 490
            ||.:|.           .:|:.:|::|:|:..:.|::..   .||.:.   .|.:|       ||
Zfish   458 PYTKLC-----------CKGFCIDILKKLSRNIKFSYDLYLVTNGKHGKLVRGIWN-------GM 504

  Fly   491 LREIMTGRADLAITDLTITSEREQALDFTIPFMNLGIAILYLKPQKATPELFTFMDPFSEEVWWF 555
            :.|:...|||:||..|||..||.:.:||::||:..||:::..: ...|.....|::|:|..||..
Zfish   505 IGEVFYKRADMAIGSLTINEERSEIIDFSVPFVETGISVMVAR-SNGTVSPSAFLEPYSPAVWVM 568

  Fly   556 LGFSFLG-VSLSFFILGRLSPSEWDNPYPCIEEPEELENQFTLGNSIWFTTGALLQQGSEI-GPK 618
            :....|. |:::.|:....||..::......::|.  ...||:|.|:|...|.:......| .||
Zfish   569 MFVMCLTVVAVTVFVFEYCSPVGYNRSLVSAKDPG--GPTFTIGKSVWLLWGIVFNNSVPIENPK 631

  Fly   619 ALSTRTVASFWWFFTLIVVSSYTANLAAFLTIEKPQSLINSVDDLADNK--------DGVVYGAK 675
            ..:::.:...|.||.:|.::|||||||||:..|:   .|::|..|:|.|        ....:|..
Zfish   632 GTTSKIMVLVWAFFAVIFLASYTANLAAFMIQEQ---YIDTVSGLSDKKFQKPQDQYPPFRFGTV 693

  Fly   676 KTGST-RNFFMTSAEERYKKMNKFMSENPQYLTEDNMEGVNRVKTNTHYAFLMESTSIEYNTKRE 739
            ..||| ||.     ...|.:|:..|.:..|...||   .:|.:||....||:.::..:.|...::
Zfish   694 PNGSTERNI-----RSNYPEMHSHMVKYNQKGVED---ALNSLKTGKLDAFIYDAAVLNYMAGKD 750

  Fly   740 --CNLKKIGD--ALDEKGYGIAMRKDWPHRGKFNNALLELQEQGVLEKMKNKWWNEVGTGICATK 800
              |.|..||.  .....|||||::|:...:...:.|||:....|..:|::..|.    ||||..:
Zfish   751 EGCKLVTIGSGKVFATTGYGIALQKESRWKRPIDLALLQFLADGDTQKLQTVWL----TGICRNE 811

  Fly   801 EDAPDATPLDMNNLEGVFFVLLVGSCCALLYGIISWVLFVMKKAHHYRVPLRDALKEEFQFVID- 864
            :....::.||::|:.|||::|||....:||  :.:|...:..|..|   .:|.:.:.:|...|. 
Zfish   812 KKEVMSSKLDIDNMAGVFYMLLVAMGLSLL--VFAWEHLLYWKLRH---SVRKSERLDFLLAISR 871

  Fly   865 -----FN-----------------------NYVRVLKNSASIYSRSR-QSSMSVASVAQES 896
                 ||                       |.:::|:.:..|.|.:| ::|:..|:...|:
Zfish   872 GIYSCFNGVEDTDRKGNMQNPDVTTSYTQANMLKMLQTAKDIVSSARVENSLDNATKTIEN 932

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GluRIIENP_001036733.1 PBP1_iGluR_Kainate 42..396 CDD:107377 61/336 (18%)
ANF_receptor 51..382 CDD:279440 55/311 (18%)
PBP2_iGluR_Kainate 419..790 CDD:270432 109/391 (28%)
Lig_chan 551..824 CDD:278489 82/287 (29%)
grin2caNP_001352716.1 PBP1_iGluR_NMDA_NR2 38..398 CDD:107373 58/325 (18%)
PBP2_iGluR_NMDA_Nr2 409..810 CDD:270436 118/440 (27%)
NMDAR2_C 847..>938 CDD:313729 15/89 (17%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170591322
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1052
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
32.740

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