DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Wsck and PTPRM

DIOPT Version :10

Sequence 1:NP_733018.1 Gene:Wsck / 318600 FlyBaseID:FBgn0046685 Length:791 Species:Drosophila melanogaster
Sequence 2:XP_016881383.2 Gene:PTPRM / 5797 HGNCID:9675 Length:1532 Species:Homo sapiens


Alignment Length:699 Identity:134/699 - (19%)
Similarity:213/699 - (30%) Gaps:270/699 - (38%)


- Green bases have known domain annotations that are detailed below.


  Fly   103 TRCLANKAQYCGGVGVHSYYSTI--LTKQPGPHHLR--ISNKTENS------LTLSWNAYEARKL 157
            |||             |||..|:  ..:..|...:|  :|..||||      ..||.....:.||
Human   433 TRC-------------HSYNLTVHYCYQVGGQEQVREEVSWDTENSHPQHTITNLSPYTNVSVKL 484

  Fly   158 LL---AGGAEA-------------VLPNQLLDNFLIKAQVLK-----------------TYSSLP 189
            :|   .|..|:             .:|.:.:.....:.::..                 ||.::.
Human   485 ILMNPEGRKESQELIVQTDEDLPGAVPTESIQGSTFEEKIFLQWREPTQTYGVITLYEITYKAVS 549

  Fly   190 AF-PQPEFMVQS-------TETQFELTDLHPATLYNISVRAMCKDAQVGQSECGQASIEATTEVG 246
            :| |:.:...||       .||.|....|:|.|.|:.::|     |...:.....|:.:.||::.
Human   550 SFDPEIDLSNQSGRVSKLGNETHFLFFGLYPGTTYSFTIR-----ASTAKGFGPPATNQFTTKIS 609

  Fly   247 LPS-PVPAQPKILSRTDRTVTIELSPIRNDNGPLSKLLVIVE-----------YVDNALSQPF-- 297
            .|| |.......|::||.|||:.|.|..:...|:|...::||           .:......|.  
Human   610 APSMPAYELETPLNQTDNTVTVMLKPAHSRGAPVSVYQIVVEEERPRRTKKTTEILKCYPVPIHF 674

  Fly   298 -DAQLLGSWQQAQQDGVPYYIAAELDYDRPEDN--RTRRFVVGDGKRYGRFTNKPLDQPDAHVHI 359
             :|.||.|         .||.|||.    |.|:  ..:.|.:||.|.|..:.|.|| .|.....|
Human   675 QNASLLNS---------QYYFAAEF----PADSLQAAQPFTIGDNKTYNGYWNTPL-LPYKSYRI 725

  Fly   360 SLGLVSTLEGVTKTMYSRGTHDQHVTSLDDFSYATFEKGQSSVVALAVTCVIFGSCLLLSLIAYF 424
            .....|...|.||              :|....||    :::::...:|..              
Human   726 YFQAASRANGETK--------------IDCVQVAT----KAAIIVTQLTTP-------------- 758

  Fly   425 YLRYKTCRG-RRLTGGNTHEMTLQTPIIERENNGYLVEDDPLPHSPENFKQQLQQLVEGYERIPR 488
            |:|.....| .:|||..|.:                    |:| .||                  
Human   759 YIRIAPAAGDGQLTGAATPK--------------------PVP-EPE------------------ 784

  Fly   489 NALRLNVNDVIGDGRFGEIITGKVSTNDFARDCTLHVLCLDDLNGTTQAQLLRELRQLSQLKRQE 553
                                                                         |:.:
Human   785 -------------------------------------------------------------KQTD 788

  Fly   554 HLLDFYGVSASPDWFYLIF-------EQQRMSLKRKLVESRLMAPSPRLTSLSEQLVLQWIYELA 611
            |.:...||.|....|.:||       ::::::.|||...|........:.:..::...:......
Human   789 HTVKIAGVIAGILLFVIIFLGVVLVMKKRKLAKKRKETMSSTRQEMTVMVNSMDKSYAEQGTNCD 853

  Fly   612 SAMNYLSSCQVVHRQLCSHSVFVTSDFKLKLSV---FGPLPYMNIARQQP--DHNRWLAPE---- 667
            .|.:::.:..:..|.:.|.|.|......|..||   :.|.|::..|...|  |....:|.:    
Human   854 EAFSFMDTHNLNGRSVSSPSSFTMKTNTLSTSVPNSYYPDPFVPTAILVPINDETHTMASDTSSL 918

  Fly   668 VLRHQHHHSTRSDVWSLACVAWECCALGGTPYANAVASNQQLLEAIRAA 716
            |..|.:.....:||                ||...     ||..|||.|
Human   919 VQSHTYKKREPADV----------------PYQTG-----QLHPAIRVA 946

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
WsckNP_733018.1 WSC 42..115 CDD:460348 3/11 (27%)
fn3 130..222 CDD:394996 28/140 (20%)
PTKc 497..750 CDD:270623 38/236 (16%)
PTPRMXP_016881383.2 MAM 50..207 CDD:214533
FN3 180..>663 CDD:442628 55/247 (22%)
ig 217..299 CDD:395002
fn3 524..599 CDD:394996 15/79 (19%)
R-PTPc-M-1 947..1236 CDD:350481 134/699 (19%)
R-PTPc-M-2 1322..1527 CDD:350483
Blue background indicates that the domain is not in the aligned region.

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