DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Wsck and ptprua

DIOPT Version :9

Sequence 1:NP_733018.1 Gene:Wsck / 318600 FlyBaseID:FBgn0046685 Length:791 Species:Drosophila melanogaster
Sequence 2:XP_005159609.1 Gene:ptprua / 563584 ZFINID:ZDB-GENE-060503-232 Length:1478 Species:Danio rerio


Alignment Length:540 Identity:125/540 - (23%)
Similarity:172/540 - (31%) Gaps:192/540 - (35%)


- Green bases have known domain annotations that are detailed below.


  Fly    86 CANVLEP------QEQQDEQLC---------NTRCLANKAQYC--------GGVG---------- 117
            ||..:.|      .|.|..||.         .|||.......|        ||.|          
Zfish   379 CAEPMRPLRGLTATEIQSRQLLLQWEPVGYNLTRCHTYSLSLCYRYSTATGGGAGGNNATVRECL 443

  Fly   118 -VHSYYSTILTKQPGPHH-----LRISN------------KTE---------NSLT--------- 146
             |....|....:...|.|     |.::|            :||         .|||         
Zfish   444 SVERNTSRFTLRDLPPFHTVHVRLALANPEGKKESREVTFQTEEDIPGGIAPESLTFTPLDDMIF 508

  Fly   147 LSWNAYEARKLLLAGGAEAVLPNQLLDNFLIKAQVLKTYSSLPAF--PQPEFMVQ--STETQFEL 207
            |.|.             |.:.||.|:..:.|..|.::  ||.|:.  |.|...|.  ..||....
Zfish   509 LKWE-------------EPLEPNGLITQYEISYQSIE--SSDPSINVPGPRRTVSKLKNETYHMF 558

  Fly   208 TDLHPATLYNISVRAMCKDAQVGQSECGQASIEATTEVGLPS----PVPAQPKILSRTDRTVTIE 268
            :.|||.|.|.:||||..... .||:    |..|.||.:..|:    .||:.   ||.::.|:|:.
Zfish   559 SGLHPGTTYLVSVRARTAKG-FGQT----ALTEITTNISAPAFDYEDVPSP---LSESESTITVL 615

  Fly   269 LSPIRNDNGPLSKLLVIVEYVDNALSQPFDAQLLGSWQ-------QAQQDG-----VPYYIAAEL 321
            |.|......|:|...|:|  |:...|:....:.||..:       ..:..|     .|:|..|||
Zfish   616 LRPALGRGAPVSTYHVVV--VEEDGSRQVRRRELGHMECFPAPSSHGETSGGAGGTPPHYYTAEL 678

  Fly   322 D-YDRPEDNRTRRFVVGDGKRYGRFTNKPLDQPDAHVHISLGLVSTLEGVTKTMYSRGTH----D 381
            . ...||   ...|.|||...|..:.|.||| |..:..|.....|...|.|:....|...    .
Zfish   679 SPSSLPE---ATPFTVGDNHTYSGYWNTPLD-PSKNYLIYFQASSNFRGETRINCIRIARKVACK 739

  Fly   382 QHVTSLDDFSYATFEKGQSSVVALAVTCVIFGSC--------LLLSLIA-------------YF- 424
            .|..:|:...:|. :.|           :|.|:|        |||..|.             |: 
Zfish   740 DHKRALEVSQHAE-DMG-----------LILGACAGGLVVLILLLGAIVVIVKKGRDIYSYPYYP 792

  Fly   425 ------------YLRYKTCRGRRLTGGNTHEMTLQTPIIERENNGYLVEDDPLPHSPENFKQQLQ 477
                        |.:.|||:...|....|...|||             :||...|:         
Zfish   793 RKKVNINKAVMTYRQEKTCKLGSLDCSTTEHSTLQ-------------QDDRTAHT--------- 835

  Fly   478 QLVEGYERIPRNALRLNVND 497
             .::.:....||..|..||:
Zfish   836 -FLDSHNCTARNEQRSTVNE 854

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
WsckNP_733018.1 WSC 42..115 CDD:280068 11/51 (22%)
fn3 130..222 CDD:278470 32/130 (25%)
TyrKc 493..746 CDD:197581 2/5 (40%)
PTKc 497..750 CDD:270623 0/1 (0%)
ptpruaXP_005159609.1 MAM 26..186 CDD:279023
MAM 26..184 CDD:99706
I-set 188..281 CDD:254352
FN3 285..356 CDD:214495
FN3 385..485 CDD:238020 18/99 (18%)
FN3 494..589 CDD:238020 32/114 (28%)
Y_phosphatase 922..1157 CDD:278528
PTPc 934..1157 CDD:238006
PTPc 1189..1470 CDD:214550
PTPc 1219..1470 CDD:238006
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E2759_KOG4228
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.900

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