DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Wsck and Shark

DIOPT Version :9

Sequence 1:NP_733018.1 Gene:Wsck / 318600 FlyBaseID:FBgn0046685 Length:791 Species:Drosophila melanogaster
Sequence 2:NP_524743.2 Gene:Shark / 44353 FlyBaseID:FBgn0015295 Length:939 Species:Drosophila melanogaster


Alignment Length:910 Identity:184/910 - (20%)
Similarity:316/910 - (34%) Gaps:286/910 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly    26 GLPLGAAVP--QEAPAYYYVGCYTAR----TDLLHESVYAKTPQTCIEI--CEHQGH-------- 74
            |||....||  ::.|.      :..|    |:|||.:......:...|:  |.::..        
  Fly    97 GLPTKLTVPLIRDLPP------HNTRSHGVTNLLHRATSKNESKVVFELLKCGYRNFDAKNQDGQ 155

  Fly    75 ---HYAVLASEKCFCANVLEPQEQQDEQLCNTRCLANKAQYCGGVGVH--------SYYSTILTK 128
               |.|.|.|::    ::|       :.|.|.:...|.:...|...:|        |:..|:::.
  Fly   156 TALHLAALHSDE----DIL-------KHLLNAKVQVNSSDSFGCQPLHYAARSKPASFIRTLISA 209

  Fly   129 QPGPHHLRISN--KTENSLTLSWNAYEARKLLLA--------------------GGAEAV----- 166
            |.......|.|  ...:......|....::||||                    .|..||     
  Fly   210 QANVQGRNIDNGYVPLHEAAKHGNLEAVQELLLAEAPPLPRTSSGEFPFDLAKEAGQTAVEEFLL 274

  Fly   167 ---LP------NQLLDNFLIKAQ---VLKTYSSLPAFPQPE------FMVQSTETQFELTDLHPA 213
               ||      :|.....|.:.:   :||.::......|||      |:|:.:|:        ||
  Fly   275 NYKLPPANTTRDQWYHGTLTREEAVAILKKHAKELLAKQPEVDTSGCFLVRYSES--------PA 331

  Fly   214 TLYNISVRAMC----KDAQVGQSECGQ---------------------ASIE------ATTEVGL 247
            . ..:.:..:|    |:.::.|::..|                     .|:|      .....||
  Fly   332 A-SGLVLTLLCDQVVKNFRISQADLYQNGNKVQSGGSKFLYIDDGPYWPSVEHLIAHFMRFSYGL 395

  Fly   248 P----SPVPAQPK-------ILSRTD--------RTVTIELSPIRNDNGPLSKLLVIV--EYVDN 291
            |    .|||.|||       .:.|::        .|....:||..:...|....|.|.  :..:|
  Fly   396 PVSLKYPVPPQPKPEVPSFATIPRSNMKPKAASPATPPTPVSPHSHHQHPHVPALTITKKKQKEN 460

  Fly   292 ALSQPFDAQLLGSWQQAQQDGVPYYIAAELDYDRPEDNRTRRFVVGDGKRYGRFTNKPLDQPDAH 356
            : |..|:...|.|.::|.           .|.:....|:::      |||           .|:.
  Fly   461 S-SSMFNTLRLTSPKKAL-----------FDMNSLRKNKSK------GKR-----------SDSE 496

  Fly   357 VHISLGLVSTLEGVTKTMYSRGTHDQHVTSLDDFSYATFE----KGQSSVVALAVTCVIFGSCLL 417
            ..:|    .:|.|..:.:.:.....:.::...:||  ||.    .|..:..|..|..|...:..:
  Fly   497 SSVS----GSLAGTEQELQAAAPMLKSLSFSTEFS--TFNADGVTGSGAAAAGEVYNVPRNNTPI 555

  Fly   418 ---LSLIAY-------FYLRYKTCRGRRLTG---GNTHEMT----------LQTPIIERENN--- 456
               |..||.       ::.:......|...|   ||.::.|          ::.|.:.|.|:   
  Fly   556 EIDLPPIAQKTEAEVEYFTKSDVAIERERAGQWIGNGYQPTMDVLSLLDQQIKAPAVARLNSLGP 620

  Fly   457 ---------GYL---VEDDP-LPHSPENFKQQLQQLVEGYERIPRNALRLNVNDVIGDGRFGEII 508
                     .||   ....| .|.:.|....:|:..:|     |.   :|.::..||.|.||.:.
  Fly   621 NASTESEMASYLHRKCSGTPSTPSATEVEAAKLRFFIE-----PE---KLVLDREIGHGEFGSVH 677

  Fly   509 TG----KVSTNDFARDCTLHVLCLDDLNGTTQAQLLRELRQLSQLKRQEH--LLDFYGVSASPDW 567
            :|    |....:.:| ..:.:..|.|.:...|    ..||:.|.:.|.||  ::...|::...  
  Fly   678 SGWLLRKSGAGEESR-LEVAIKMLSDEHSNKQ----EFLREASVMMRLEHKCIVRLIGIAKGE-- 735

  Fly   568 FYLIFEQQRMSLKRKLVESRLMAPSPRLTSLSEQLVLQWIYELASAMNYLSSCQVVHRQLCSHSV 632
             .|:..|:...|...|  ..::.....:|:.:|..|  |..::|..|:||.|...|||.|.:.::
  Fly   736 -MLMMVQELAPLGSML--QYILDHGHEITANAELKV--WASQIACGMHYLESQHFVHRDLAARNI 795

  Fly   633 FVTSDFKLKLSVFGPLPYMNIARQ-QPDHN------------RWLAPE-----VLRHQHHHSTRS 679
            .:|:..:.|:|.||      ::|. :|...            ||.|||     :..|      .|
  Fly   796 LLTARHQAKISDFG------MSRSLRPGSTEYQFTQGGRWPIRWYAPESFNLGIFSH------AS 848

  Fly   680 DVWSLACVAWECCALGGTPYANAVASNQQLLEAIRAAVRPAQPAYVYGDLYQLLLNCWQLEPSER 744
            ||||.....||..:||..||..  .||...::.:.:..|..||......:|.::.:||:..|.:|
  Fly   849 DVWSFGVTIWEMFSLGAPPYGE--ISNVDAIKLVDSGERLPQPNLCPAYIYAVMQSCWKERPKDR 911

  Fly   745  744
              Fly   912  911

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
WsckNP_733018.1 WSC 42..115 CDD:280068 15/89 (17%)
fn3 130..222 CDD:278470 24/136 (18%)
TyrKc 493..746 CDD:197581 70/276 (25%)
PTKc 497..750 CDD:270623 69/272 (25%)
SharkNP_524743.2 SH2_Nterm_shark_like 8..91 CDD:198210
Ank_2 <112..184 CDD:289560 15/88 (17%)
ANK 117..241 CDD:238125 22/134 (16%)
ANK repeat 124..151 CDD:293786 4/26 (15%)
ANK repeat 153..184 CDD:293786 8/41 (20%)
Ank_2 158..247 CDD:289560 20/99 (20%)
ANK repeat 186..217 CDD:293786 5/30 (17%)
ANK repeat 220..245 CDD:293786 6/24 (25%)
Ank_4 224..274 CDD:290365 8/49 (16%)
SH2_Cterm_shark_like 287..395 CDD:198211 18/116 (16%)
TyrKc 662..921 CDD:197581 70/276 (25%)
PTKc_Syk_like 666..926 CDD:270650 69/272 (25%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR24418
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
11.100

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