DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Wsck and htl

DIOPT Version :9

Sequence 1:NP_733018.1 Gene:Wsck / 318600 FlyBaseID:FBgn0046685 Length:791 Species:Drosophila melanogaster
Sequence 2:NP_524394.2 Gene:htl / 42160 FlyBaseID:FBgn0010389 Length:729 Species:Drosophila melanogaster


Alignment Length:618 Identity:136/618 - (22%)
Similarity:244/618 - (39%) Gaps:156/618 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly   258 LSRTDRTVTIE-----------------LSPIRND----------------NGPLSKLLVI---- 285
            |.|...|:|:|                 |..||:|                .|||:..||:    
  Fly   152 LKRNRWTLTMEDLVPGDCGNYTCKVCNSLGCIRHDTQVIVSDRVNHKPILMTGPLNLTLVVNSTG 216

  Fly   286 ---VEYVDNALSQPFDAQLLGSWQQAQQDGVPYYIAAELDYDRPEDNRTRRFVVGDGKRYGRFTN 347
               .:|:.:..|:.       :|......|:          ....:||:   ::.:.|....|.|
  Fly   217 SMHCKYLSDLTSKK-------AWIFVPCHGM----------TNCSNNRS---IIAEDKDQLDFVN 261

  Fly   348 KPLDQPDAHVHI---SLGLVSTLEGVTKTMYSRGTHDQHVTSLDDFSYATFEKGQSSVVALAVTC 409
            ..::|...:..:   |||..::      |.|.|.....||          .|.|.:|....:.:.
  Fly   262 VRMEQEGWYTCVESNSLGQSNS------TAYLRVVRSLHV----------LEAGVASGSLHSTSF 310

  Fly   410 V---IFGSCLLL---SLIAYFYLR----YKTCRGRRLT--------------GGNTHEMTLQTPI 450
            |   :||..:.:   :|..::.:|    .|..:.|..|              ||.....::.|.|
  Fly   311 VYIFVFGGLIFIFMTTLFVFYAIRKMKHEKVLKQRIETVHQWTKKVIIFKPEGGGDSSGSMDTMI 375

  Fly   451 -----IERENNGYLVE-DDPLPHSPENFKQQLQQLVEGYERIPRNALRLNVNDVIGDGRFGEIIT 509
                 |:::....|.. ::|.|.:...|     .|...:| :||:.|.|..  .:|:|.||.::.
  Fly   376 MPVVRIQKQRTTVLQNGNEPAPFNEYEF-----PLDSNWE-LPRSHLVLGA--TLGEGAFGRVVM 432

  Fly   510 GKVSTNDFARDCTLHVLCLDDLNGTTQAQLLRELRQLSQLKRQEHLLDFYGVSASPDWFYLIFE- 573
            .:|:....|..........||:     |.|:||:..:..:.|..::::..|..:.....|:|.| 
  Fly   433 AEVNNAIVAVKMVKEGHTDDDI-----ASLVREMEVMKIIGRHINIINLLGCCSQNGPLYVIVEY 492

  Fly   574 QQRMSLKRKLVESRLMA-----------PSPRLTSLSEQLVLQWIYELASAMNYLSSCQVVHRQL 627
            ....:||..|.::|...           |||....::|:.::::.:::|..|:||:|.:.:||.|
  Fly   493 APHGNLKDFLYKNRPFGRDQDRDSSQPPPSPPAHVITEKDLIKFAHQIARGMDYLASRRCIHRDL 557

  Fly   628 CSHSVFVTSDFKLKLSVFGPLPYMNIAR--QQPDHNR----------WLAPEVLRHQHHHSTRSD 680
            .:.:|.|:.|:.||::.||      :||  |..|:.|          |:|||.|:.:.:.| :||
  Fly   558 AARNVLVSDDYVLKIADFG------LARDIQSTDYYRKNTNGRLPIKWMAPESLQEKFYDS-KSD 615

  Fly   681 VWSLACVAWECCALGGTPYANAVASNQQLLEAIRAAVRPAQPAYVYGDLYQLLLNCWQLEPSERS 745
            |||...:.||....|..||. .:.|.::|...:.:..|..:||....::|.|:..||.....:|.
  Fly   616 VWSYGILLWEIMTYGQQPYP-TIMSAEELYTYLMSGQRMEKPAKCSMNIYILMRQCWHFNADDRP 679

  Fly   746 SCEDVAFGVRQLMTSPRHALSFDRVAGGLDTLP 778
            ...::...:.:|:.:....|..|  ...|||.|
  Fly   680 PFTEIVEYMDKLLQTKEDYLDVD--IANLDTPP 710

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
WsckNP_733018.1 WSC 42..115 CDD:280068
fn3 130..222 CDD:278470
TyrKc 493..746 CDD:197581 72/276 (26%)
PTKc 497..750 CDD:270623 71/276 (26%)
htlNP_524394.2 Ig 112..191 CDD:299845 9/38 (24%)
IG_like 113..191 CDD:214653 9/38 (24%)
IG_like 205..289 CDD:214653 19/109 (17%)
PKc_like 404..692 CDD:304357 77/303 (25%)
STYKc 416..688 CDD:214568 73/286 (26%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG0200
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
21.810

Return to query results.
Submit another query.