DRSC/TRiP Functional Genomics Resources

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Protein Alignment Wsck and Pdgfrl

DIOPT Version :10

Sequence 1:NP_733018.1 Gene:Wsck / 318600 FlyBaseID:FBgn0046685 Length:791 Species:Drosophila melanogaster
Sequence 2:NP_001011921.1 Gene:Pdgfrl / 290771 RGDID:1308028 Length:375 Species:Rattus norvegicus


Alignment Length:114 Identity:26/114 - (22%)
Similarity:42/114 - (36%) Gaps:39/114 - (34%)


- Green bases have known domain annotations that are detailed below.


  Fly   248 PSPVPAQPKILSRTDRTVTIELSPIRNDNGPLSKLLVIVEYVDNA------------LSQPFDAQ 300
            |:...|:|||....||...        |:.|.|: .::::.:||.            ..|..:.:
  Rat    40 PTNKKAKPKIPKIKDRDTA--------DSAPKSQ-SIMMQAMDNGRFQKPAATVSLMAGQSVELR 95

  Fly   301 LLGS---WQQAQQDGVPYYIAAELDYDRPEDNRTRRFVVGDGKRYGRFT 346
            ..||   |      ..|.|:      |..:|:   |..|...:|||:.|
  Rat    96 CKGSKVEW------SYPAYL------DTFKDS---RLTVKQNERYGQLT 129

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
WsckNP_733018.1 WSC 42..115 CDD:460348
fn3 130..222 CDD:394996
PTKc 497..750 CDD:270623
PdgfrlNP_001011921.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 19..63 8/30 (27%)
IG_like 83..>143 CDD:214653 14/62 (23%)
Ig 278..372 CDD:472250
Ig strand B 289..293 CDD:409353
Ig strand C 304..308 CDD:409353
Ig strand E 340..344 CDD:409353
Ig strand F 354..359 CDD:409353
Ig strand G 367..370 CDD:409353
Blue background indicates that the domain is not in the aligned region.

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