DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Wsck and Ptprf

DIOPT Version :9

Sequence 1:NP_733018.1 Gene:Wsck / 318600 FlyBaseID:FBgn0046685 Length:791 Species:Drosophila melanogaster
Sequence 2:XP_006502927.1 Gene:Ptprf / 19268 MGIID:102695 Length:1924 Species:Mus musculus


Alignment Length:514 Identity:96/514 - (18%)
Similarity:181/514 - (35%) Gaps:124/514 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly    34 PQEAPAYY-----YVGCYTARTDLLHESVYAKTPQTCIEICEHQGH--HYAVL---ASEKCFCAN 88
            |::.|:.:     ..|..|:.|:|..:      |..   :.|..||  :|.|:   .:.:....|
Mouse   917 PEDVPSGFPQNLRVTGLTTSTTELTWD------PPV---LAERNGHITNYTVVYRDINSQLELQN 972

  Fly    89 V----------LEPQEQQDEQLCNTRCLANKAQYCGGVGVHSYYSTILTKQPGPHHLRISNKTEN 143
            |          |:|....|     .:..|:.::..|.:.......|:..:|....:.|::...:.
Mouse   973 VTNDTHLTLLGLKPDTTYD-----IKVRAHTSKGAGPLSPSIQSRTMPVEQVFAKNFRVAAAMKT 1032

  Fly   144 SLTLSWNAYEARKLLLAGGAEAVLPNQLLDNFLIKAQVLKTYSSLPAFPQPEFMVQSTETQFE-- 206
            |:.|||...::.|        :.:|.::|.|                       .||.|....  
Mouse  1033 SVLLSWEVPDSYK--------SAVPFKILYN-----------------------GQSVEVDGHSM 1066

  Fly   207 ---LTDLHPATLYNISVRAMCKDAQVGQSECGQASIEATTEVGLPSPVPAQPKILSRTDRTVTIE 268
               :.||.|.|.|:..:  |.:.:..|..: ...||....::....|:||...|   .|...::.
Mouse  1067 RKLIADLQPNTEYSFVL--MNRGSSAGGLQ-HLVSIRTAPDLLPQKPLPASAFI---EDGRFSLS 1125

  Fly   269 LSPIRNDNGPLSKLLVIVEYVD----NALSQPFDA-------QLLGSWQQA---------QQDGV 313
            :..:: |...:....::|..:|    |.|:..::.       :||.:.:|.         |.:.:
Mouse  1126 MPQVQ-DPSLVRWFYIVVVPIDRVGGNLLAPRWNTPEELELDELLEAIEQGEEKQRRRRRQAERL 1189

  Fly   314 PYYIAAELDYDRPEDNRTRRFVVGDGKRYGRFTNKPLDQPDAHVHISLGLVSTLEGVTKTMYSRG 378
            ..|:||::|. .|:     .|.:||.|.|..|.|:|| .||......: |.|..|.:.:..|:..
Mouse  1190 KPYVAAQVDV-LPD-----TFTLGDKKSYRGFYNRPL-SPDLSYQCFV-LASLKEPMDQKRYASS 1246

  Fly   379 THDQHVTSLDDFSYATFEKGQSSVVALAVTCVIFGSCLLLSLIAYFYLRYKTCRGRRLTGGNTHE 443
            .:...:.     ...|..:.|.....|.||..:. :.:|:.||....|.:|..|....:..:...
Mouse  1247 PYSDEIV-----VQVTPAQQQEEPEMLWVTGPVL-AVILIILIVIAILLFKRKRTHSPSSKDEQS 1305

  Fly   444 MTLQTPI-------IERENNGYLVEDDPLPHSPENFKQQ------LQQLVEGYERIPRN 489
            :.|:..:       :|.....|.......|..|.....:      :..|.:..||:..|
Mouse  1306 IGLKDSLLAHSSDPVEMRRLNYQTPGSSAPSCPNISSMRDHPPIPITDLADNIERLKAN 1364

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
WsckNP_733018.1 WSC 42..115 CDD:280068 16/87 (18%)
fn3 130..222 CDD:278470 17/96 (18%)
TyrKc 493..746 CDD:197581
PTKc 497..750 CDD:270623
PtprfXP_006502927.1 I-set 33..124 CDD:369462
Ig2_RPTP_IIa_LAR_like 152..232 CDD:319301
Ig3_RPTP_IIa_LAR_like 252..320 CDD:143216
FN3 325..414 CDD:238020
FN3 421..513 CDD:238020
FN3 518..607 CDD:238020
FN3 615..709 CDD:238020
FN3 716..822 CDD:238020
FN3 827..916 CDD:238020
FN3 925..1013 CDD:238020 17/101 (17%)
FN3 1022..>1081 CDD:238020 17/89 (19%)
PTP_DSP_cys 1352..1627 CDD:391942 4/13 (31%)
R-PTP-F-2 1629..1919 CDD:350477
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E2759_KOG4228
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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