DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Wsck and Csf1r

DIOPT Version :9

Sequence 1:NP_733018.1 Gene:Wsck / 318600 FlyBaseID:FBgn0046685 Length:791 Species:Drosophila melanogaster
Sequence 2:NP_001032948.2 Gene:Csf1r / 12978 MGIID:1339758 Length:977 Species:Mus musculus


Alignment Length:786 Identity:156/786 - (19%)
Similarity:263/786 - (33%) Gaps:261/786 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly    96 QDEQLCNTRCLANKAQYCGGVGVHSYYSTILTKQPGPHHLRISNKTENSLTLSWNAYEARKLLLA 160
            ||......|.|:..|......|:   ||.:.:...|          ..:.|:::...|:..|.|.
Mouse   253 QDNYYKKVRALSLNAVDFQDAGI---YSCVASNDVG----------TRTATMNFQV
VESAYLNLT 304

  Fly   161 GGAEAVLPNQLLDNFLIKAQVLKTYSSLP----AFPQPEFMVQSTETQFELTDLHPATLYNISVR 221
             ..:::|....:.:.||.......|.|:.    .:..|.|     |.|.:|..:....:|..:.:
Mouse   305 -SEQSLLQEVSVGDSLILTVHADAYPSIQHYNWTYLGPFF-----EDQRKLEFITQRAIYRYTFK 363

  Fly   222 AMCKDAQVGQSECGQASIEATTEV-----------------------------------GLPSPV 251
            ....  :|..||.||..:.|..:.                                   |.|.|.
Mouse   364 LFLN--RVKASEAGQYFLMAQNKAGWNNLTFELTLRYPPEVSVTWMPVNGSDVLFCDVSGYPQPS 426

  Fly   252 PAQPKILSRTDRTVTIELSPIRNDNGPLSKLLVIVEYVDNALSQ-PFDAQLLGSWQQAQQDGVPY 315
            ....:....|||....:...:.||..|            ..||| |||..:              
Mouse   427 VTWMECRGHTDRCDEAQALQVWNDTHP------------EVLSQKPFDKVI-------------- 465

  Fly   316 YIAAELDYDRPEDNRT----RRFVVGDGKRYGRFTNKPLDQPDAHVHISLGLVSTLEGVTKTMYS 376
             |.::|.....:.|.|    ....||:..:|.|             .:|||....|         
Mouse   466 -IQSQLPIGTLKHNMTYFCKTHNSVGNSSQYFR-------------AVSLGQSKQL--------- 507

  Fly   377 RGTHDQHVTSLDDFSYATFEKGQSSVVALAVTCVIFGSCLLLSLIAYFYLRYKTCRGRRLTGGNT 441
                                ..:|....:.|.|:...|.|:|.|:...| :||          ..
Mouse   508 --------------------PDESLFTPVVVACMSVMSLLVLLLLLLLY-KYK----------QK 541

  Fly   442 HEMTLQTPIIER-ENNGY-LVEDDPLPHSPENFKQQLQQLVEGYERIPRNALRLNVNDVIGDGRF 504
            .:..::..|||| |.|.| .::...||::            |.:| .|||  .|.....:|.|.|
Mouse   542 PKYQVRWKIIERYEGNSYTFIDPTQLPYN------------EKWE-FPRN--NLQFGKTLGAGAF 591

  Fly   505 GEII------TGKVSTNDFARDCTLHVLCLDDLNGTTQAQ----LLRELRQLSQLKRQEHLLDFY 559
            |:::      .||       .|..|.| .:..|..|..|.    |:.||:.:|.|.:.|::::..
Mouse   592 GKVVEATAFGLGK-------EDAVLKV-AVKMLKSTAHADEKEALMSELKIMSHLGQHENIVNLL 648

  Fly   560 GV---------------------------------SASP------DWFYLIFEQQRMSLKR---- 581
            |.                                 |.||      |..|.....::..::|    
Mouse   649 GACTHGGPVLVITEYCCYGDLLNFLRRKAEAMLGPSLSPGQDSEGDSSYKNIHLEKKYVRRDSGF 713

  Fly   582 ------KLVESRLMAPSPRLTSLSEQL------------VLQWIYELASAMNYLSSCQVVHRQLC 628
                  ..||.|.::.|...:...:.|            :|.:..::|..|.:|:|...:||.:.
Mouse   714 SSQGVDTYVEMRPVSTSSSDSFFKQDLDKEASRPLELWDLLHFSSQVAQGMAFLASKNCIHRDVA 778

  Fly   629 SHSVFVTSDFKLKLSVFGPLPYMNIARQ-QPDHN-----------RWLAPEVLRHQHHHSTRSDV 681
            :.:|.:||....|:..||      :||. ..|.|           :|:|||.: ....::.:|||
Mouse   779 ARNVLLTSGHVAKIGDFG------LARDIMNDSNYVVKGNARLPVKWMAPESI-FDCVYTVQSDV 836

  Fly   682 WSLACVAWECCALGGTPYANAVASNQQLLEAIRAAVRPAQPAYVYGDLYQLLLNCWQLEPSERSS 746
            ||...:.||..:||..||...:.:| :..:.::...:.|||.:...::|.::.:||.|||:.|.:
Mouse   837 WSYGILLWEIFSLGLNPYPGILVNN-KFYKLVKDGYQMAQPVFAPKNIYSIMQSCWDLEPTRRPT 900

  Fly   747 CEDVAF 752
            .:.:.|
Mouse   901 FQQICF 906

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
WsckNP_733018.1 WSC 42..115 CDD:280068 5/18 (28%)
fn3 130..222 CDD:278470 16/95 (17%)
TyrKc 493..746 CDD:197581 74/335 (22%)
PTKc 497..750 CDD:270623 73/335 (22%)
Csf1rNP_001032948.2 ig 25..85 CDD:278476
IG_like 28..101 CDD:214653
IG_like 113..195 CDD:214653
Ig 113..179 CDD:299845
ig 207..293 CDD:278476 10/52 (19%)
IG_like 209..295 CDD:214653 10/54 (19%)
Ig4_SCFR_like 299..398 CDD:143176 19/106 (18%)
IG_like 311..395 CDD:214653 16/90 (18%)
Regulatory juxtamembrane domain. /evidence=ECO:0000250 540..572 9/43 (21%)
PTKc_CSF-1R 541..913 CDD:133237 89/397 (22%)
Pkinase_Tyr 580..904 CDD:285015 74/339 (22%)
Activation loop. /evidence=ECO:0000250 794..816 6/27 (22%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 921..957
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG0200
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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