DRSC/TRiP Functional Genomics Resources

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Protein Alignment SmydA-9 and Smyd3

DIOPT Version :9

Sequence 1:NP_001285040.1 Gene:SmydA-9 / 31859 FlyBaseID:FBgn0030102 Length:500 Species:Drosophila melanogaster
Sequence 2:NP_524768.2 Gene:Smyd3 / 44554 FlyBaseID:FBgn0011566 Length:468 Species:Drosophila melanogaster


Alignment Length:484 Identity:116/484 - (23%)
Similarity:176/484 - (36%) Gaps:125/484 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly    43 LKRGEIIFRDSPLLIGLAAHEEDSLNACSVCL---KML--PDTRFM--CRQGCGLPVCSLCAKKK 100
            :|||:.|..:.|....|.:  :..|..|..||   |:|  .:.|::  |.:.|.:....      
  Fly    35 IKRGQRILTEKPFAFVLKS--QYRLERCDNCLEATKVLKCSNCRYVSYCHRSCQMQAWG------ 91

  Fly   101 QHKSDCDLFKSWGPN-EPDVANSVIIRLLCVARAI----------------NLSKEQRDLI--YC 146
            |||.:|...|...|. .||.|     |:||  |.|                :.|::.|||:  |.
  Fly    92 QHKHECPFLKKVHPRVVPDAA-----RMLC--RLILRLEHGGDLIRGYYTEHGSRKFRDLMSHYA 149

  Fly   147 LQAN-------LDNNHRTEVRNAAKCFKNFPTDKKLIEIMNRTVAVLRTNGFDKTTDRTNDNQEF 204
            ...|       ||:.|.......|:.....|...:|:.|..|.:    ||||:......|...  
  Fly   150 EIKNDPMRLEHLDSLHAVLTDMMAESPSTVPNKTELMSIYGRLI----TNGFNILDAEMNSIA-- 208

  Fly   205 NYRALYPLFGVVNHDCIPNAYYTFEEKTNNMIVRAAVDIP--EGFEVTTTYTKLFTGNIARHLFL 267
              .|:|....:.:|.|.|||..|||  .|.:.|.|..|:.  :..::..:|..|......|.|.|
  Fly   209 --TAIYLGVSITDHSCQPNAVATFE--GNELHVHAIEDMECLDWSKIFISYIDLLNTPEQRRLDL 269

  Fly   268 KMKKSFTCKCSRCSDPTEKGAFISGLYCRDTNCTGLVVPEITGLPHPNWNCLVCKQKSTHAQMMK 332
            |....|.|.||:|:|..|....::.| |.:.||.       .|:.....||..|           
  Fly   270 KEHYYFLCVCSKCTDAKESKEMLAAL-CPNRNCG-------AGISVDRNNCPRC----------- 315

  Fly   333 SQDFASGAINAKVNS--NSLRTLVQY-----------------LNEKSDSFIPSSNYVV--IDAK 376
                 ...|:.|:.:  |...||.::                 |::::..|.|.:.:.|  :||.
  Fly   316 -----DAGISPKLRNAFNEAMTLTRHNLENMKDVAYLDVCKVCLDKQTGVFHPLNVWYVKTLDAA 375

  Fly   377 MSVLQRLQQGREDCSEELAHNTRL-----RYSRDITQLMD----KLGLGDSLLRTHLEELLRREE 432
            ...  .::.|:  .|:.|.:..||     :|......|:.    ||| ...|...|.:|.|...|
  Fly   376 FEA--AIEVGK--WSDALDYGQRLLPGFRKYHGPWNPLLGLLHMKLG-KIQLYEGHSKEALHHLE 435

  Fly   433 ERRAKRLADEAEKQRKLAE------LQAK 455
            |.:...........|.|.|      |||:
  Fly   436 EAQRILTVTHGRDHRLLTEQLYMLVLQAR 464

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SmydA-9NP_001285040.1 SET 25..>66 CDD:295368 6/22 (27%)
SET <216..253 CDD:279228 12/38 (32%)
Smyd3NP_524768.2 zf-MYND 60..97 CDD:280009 11/42 (26%)
TPR_12 377..440 CDD:290160 16/67 (24%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45473056
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E2759_KOG2084
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D981799at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R2289
SonicParanoid 00.000 Not matched by this tool.
54.780

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