DRSC/TRiP Functional Genomics Resources

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Protein Alignment SmydA-9 and SmydA-2

DIOPT Version :10

Sequence 1:NP_572539.2 Gene:SmydA-9 / 31859 FlyBaseID:FBgn0030102 Length:500 Species:Drosophila melanogaster
Sequence 2:NP_649084.1 Gene:SmydA-2 / 40075 FlyBaseID:FBgn0036839 Length:530 Species:Drosophila melanogaster


Alignment Length:508 Identity:128/508 - (25%)
Similarity:222/508 - (43%) Gaps:82/508 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly    25 WEIGVSKIAGRGVVATRSLKRGEIIFRDSPLLIGLAAHEEDSLNACSVCLKML-----PDTRFMC 84
            :||..:::.||.:.|||.:|.||.|.:::||::|   .:..|...|..|.:.|     |...:..
  Fly    49 FEIATNEVLGRHLRATRDIKIGEQILKEAPLVLG---PKVASAPLCLGCHRNLLAPGKPRGNYHK 110

  Fly    85 RQGCGLPVCSL-CAKKKQHKSDCDL-----FKS---WGPNEPDVANSV--IIRLLCVARAINLSK 138
            ...|..|:|.. |.....||::|.|     |:|   :.|.|.:...|.  :|.||   |.::|..
  Fly   111 CSSCSWPLCGKECEDSVHHKAECQLMSGSNFQSKINYVPGEEERKESAYCVIMLL---RCMHLKD 172

  Fly   139 EQRDL---IYCLQANLDNNHRTEVRNAAKC-----------FKNFPTDKKLIEIMNRTVAVLRTN 189
            :..|.   :|.|:.:|.....|.:....:.           .|::|.    ::|: |..|:|.||
  Fly   173 KDPDAFLKLYNLEDHLKERLETPLYQVLRANLITFIKTVLGMKDWPE----MDIL-RIAAILDTN 232

  Fly   190 GFDKTTDRTNDNQEFNYRALYPLFGVVNHDCIPNAYYTFEEKTNNMIVRAAVDIPEGFEVTTTYT 254
            .|:....|    :....|||||...:::|||:||..:.|::.. |::..|...|.:|..::.:||
  Fly   233 TFEVRQPR----ERRKIRALYPGAAMISHDCVPNMRHRFDDDM-NIVFLAKRKIAKGEILSISYT 292

  Fly   255 KLFTGNIARHLFLKMKKSFTCKCSRCSDPTEKGAFISGLYCRDTNC-TGLVV---PEITGLPHPN 315
            :.....|.|.:.|:..|.|.|.|:||.||.|.|:|.....|  ..| .|.::   |.:...|   
  Fly   293 QPLRSTIQRRVHLRQAKCFDCSCARCQDPEELGSFAGAQTC--LKCKAGKIISLNPLLNSAP--- 352

  Fly   316 WNCLVCKQKSTHAQMMKS-----QDFASGAINAKVNSNSLRTLVQYL-NEKSDSFIPSSNYVVID 374
            |.|.:|..|.:...::.|     |:..|      ::..:...|.::: ..::|  :..:|..::.
  Fly   353 WKCQLCNFKRSAKDVVTSDAELQQELES------LDKTTPVALEEFIYRHRAD--LHETNTHILQ 409

  Fly   375 AKMSVLQRLQQGREDCSEELAH---NTRLRYSRDITQLMDKLGLGDSLLRTHL----EELLRREE 432
            ||.::.|..........|||:.   |.:|:...::.:|.|....|.|:.|.:|    ||.|..:.
  Fly   410 AKYALTQLYGSAPGFAMEELSGESLNRKLQLCEELLKLADIFDGGWSIFRGNLLIDMEEALVTQA 474

  Fly   433 ERR------AKRLADEAEKQRKLAELQAKAAEADKLLEVLQKEQSEQSEQAEP 479
            .|.      .::|.:.||..|::..:.....|..:||...|...|...|:.||
  Fly   475 LRSKDPLDCEEKLRNAAEMLREIRNIMKHEPEMQQLLLERQVILSSALERFEP 527

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SmydA-9NP_572539.2 SET 26..>49 CDD:394802 10/22 (45%)
SET_SMYD <183..280 CDD:380997 30/96 (31%)
SmydA-2NP_649084.1 zf-MYND 9..46 CDD:460312
SET_SMYD <227..318 CDD:380997 30/95 (32%)
Blue background indicates that the domain is not in the aligned region.

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