DRSC/TRiP Functional Genomics Resources

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Protein Alignment SmydA-9 and SmydA-1

DIOPT Version :10

Sequence 1:NP_572539.2 Gene:SmydA-9 / 31859 FlyBaseID:FBgn0030102 Length:500 Species:Drosophila melanogaster
Sequence 2:NP_610944.1 Gene:SmydA-1 / 36581 FlyBaseID:FBgn0033917 Length:513 Species:Drosophila melanogaster


Alignment Length:490 Identity:119/490 - (24%)
Similarity:202/490 - (41%) Gaps:96/490 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly    17 PFKDKDPAWEIGVSKIAGRGVVATRSLKRGEIIFRDSPLLIGLAAHEEDSLNACSVCLKML-PDT 80
            |||       |..::..||.:||||::|..||:.:::||:.|.|   :.|...|..||..: .:.
  Fly    42 PFK-------IAHNEQLGRHLVATRTIKPYEIVLKEAPLVRGPA---QISAPVCLGCLNGIEAED 96

  Fly    81 RFMCRQGCGLPVCS-LCAKKKQHKSDCDLFKS----------WGPNEPDVANSVIIRLLCVARAI 134
            ...|.| ||.|:|. .|....:||::|.|.|.          .||:......|.:..||....:.
  Fly    97 HIECEQ-CGWPLCGPECKSLDEHKAECGLTKDRGQKVNVQEFGGPHPLYTCLSTVRCLLIGETST 160

  Fly   135 NLSKEQRDLIYCLQANLDNNHRTEVRNAAKCF-------KNFPTDKKLIEIMNRTVAVLRTNGFD 192
            ..:.:.:||     .:|::..|...:..|...       |.|.|.|...|.:.:.|..|:.||.:
  Fly   161 EKASKFQDL-----ESLESTRRGSNQWKADLVSIGQFIPKFFKTQKFTEEEIMKAVGALQINGHE 220

  Fly   193 -KTTDRTNDNQEFNYRALYPLFGVVNHDCIPNAYYTFEEKTNNMIVRAAVDIPEGFEVTTTYTKL 256
             .|||.       ::.|::.......:.|:||...:| .|..:.|:.|..:|.:...::..|:..
  Fly   221 VPTTDP-------SHVAVFYTASFTENSCLPNLAKSF-NKNGHCILWAPREIKKNAHLSICYSDA 277

  Fly   257 FTGNIARHLFLKMKKSFTCKCSRCSDPTEKGAFISGLYCRDTNCTGLVVPEITGLPHPNWNCLVC 321
            ..|...|...|...|.|.|.|.||.|.||.....|.:.|.|..|.||::|......:.:|.|..|
  Fly   278 MWGTADRQRHLMQTKLFKCACERCVDVTELDTNYSAIKCEDRQCGGLMLPTKADEWNGSWRCREC 342

  Fly   322 KQKSTHAQMMK----------SQDFASGAINAKVNSNSLRTLVQYLNEKSDSFIPSSNYVVIDAK 376
                 |.|:.|          .:|..|   ..|:..|.|:.|..|     :.::|..::.:.:.|
  Fly   343 -----HKQVQKHYVERILERAGKDIQS---MEKIAENGLKYLKHY-----EKWLPPQHFHMSEIK 394

  Fly   377 MSVLQRLQQGREDC----SEELAHNTRLRYSRDITQLMDKL------GLGDSLLRTHLEELLRRE 431
            :.::|.|.:.:::.    .:.|.  .:|.::|::.:|.:||      .||......|        
  Fly   395 ILLVQLLAKDQKELMVIPDDRLL--LKLNFARELVELYEKLTPCEVRTLGTLCFELH-------- 449

  Fly   432 EERRAKRLADEAEKQRKLAELQAKAAEADKLLEVL 466
                    :..||:.|::| |:...:..|:|.|.|
  Fly   450 --------SAIAEQTRRVA-LETSLSPKDRLEESL 475

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SmydA-9NP_572539.2 SET 26..>49 CDD:394802 9/22 (41%)
SET_SMYD <183..280 CDD:380997 24/97 (25%)
SmydA-1NP_610944.1 zf-MYND 4..40 CDD:460312
SET_SMYD <217..301 CDD:380997 22/91 (24%)
Blue background indicates that the domain is not in the aligned region.

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