DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment SmydA-9 and Smyd4

DIOPT Version :10

Sequence 1:NP_572539.2 Gene:SmydA-9 / 31859 FlyBaseID:FBgn0030102 Length:500 Species:Drosophila melanogaster
Sequence 2:NP_001099280.1 Gene:Smyd4 / 287525 RGDID:1307369 Length:801 Species:Rattus norvegicus


Alignment Length:636 Identity:121/636 - (19%)
Similarity:197/636 - (30%) Gaps:195/636 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly     7 TSELLDLHLAPFKDKDPAWEIGVS----KIAGRGVVATRSLKRGEIIFRDSPLLIGLAAHEEDSL 67
            |..|.|:.|.....:.....:.||    .:.||.:|||:.:..||::.::...:..|...|...|
  Rat   213 TKALEDMALGEENKQISGASLSVSLCTDPLKGRHLVATKDILPGELLVKEDAFVSVLNPGEMPPL 277

  Fly    68 NACSVCLKMLPDTR-----FMCRQ------------GCG-LPVCSL-CAKK---KQHKSDCDL-- 108
            ..   ||:...|||     ..|.:            ||. ...||. |.::   ..|.::|.|  
  Rat   278 RH---CLENKWDTRVTSADLYCHRCLRHTLATVPCGGCSYAKYCSQECVQQAWDHYHSTECSLGG 339

  Fly   109 --------------------FKSWGPNEPDVANSVIIRLLC--VARAINLSKEQRDLI----YCL 147
                                |:       ||..  :||::|  ..|......|.:||:    |..
  Rat   340 LLLTLGVFCHVALRMTLLARFE-------DVDR--VIRMICDKTGRKDTCLPESKDLVKTFGYTN 395

  Fly   148 QANLDNNHRTEVRNAAKCFKN-------------FPTDKK---------------LIEIMNRTVA 184
            |...:.|..|...:...|..|             .|..:|               |...:..|..
  Rat   396 QGESEENSETCEPSIPGCNVNGKYENNYDAVLSLLPHTEKHSPEHKFICAVSVSALCRQLKATSL 460

  Fly   185 VLRTNGF--------------------------------------------DKTTDRTNDNQEFN 205
            ..:|.|.                                            .|.:..||..|...
  Rat   461 QAQTTGLKSPRLKAVTPGLCTDLTVWGVAMLQHMLQLQCNAQAITSICYAGSKESIITNSRQVRL 525

  Fly   206 YRALYPLFGVVNHDCIPNAYYTFEEKTNNMIVRAAVDIPEGFEVTTTY----TKLFTGNIARHLF 266
            ...::|:..::||.|.||...:|....  ..:|||..|.:|.|:...|    :::  |...|...
  Rat   526 ATGVFPVVSLLNHSCSPNTSVSFTSTV--ATIRAAQQIAKGQEILHCYGPHESRM--GVAERQQR 586

  Fly   267 LKMKKSFTCKCSRCSDPTEKGAFISGLYCRDTNCTGLVVPEITGLPHPNWNCLVCKQKSTHAQMM 331
            |..:..|.|.|..|...|.:.|..                       |.|....|   :|....|
  Rat   587 LSSQYFFDCSCPACHAETLRAAVA-----------------------PRWEAFCC---NTCRVPM 625

  Fly   332 KSQDFASGAINAKVNSNSLRTLVQYLNEKSDSFIPSSNYVVIDAKMSVLQRLQQGREDCSEELAH 396
            :..|..|.:..:..||.|...||..|.:.......:...:..|.....:|:|.    :| :..|.
  Rat   626 QGNDVLSCSNESCTNSVSRDRLVSRLQDLQQQVHTAQKLLRSDRPEQAIQQLL----EC-QRAAE 685

  Fly   397 NTRLRYSRDITQLMDKLG-----LGD-SLLRTHLEELLRREEERRAKRLADEAEKQRKLAEL--- 452
            |........:.::.|.|.     ||| .....|:::.|:..|.|......:...:..|||::   
  Rat   686 NFLSAEHTVLGEIEDGLAQAYATLGDWRQSAAHVQKSLQVVEARHGPSSVEIGHELFKLAQVLFN 750

  Fly   453 -----QAKAA--EADKLLEVLQKEQSEQSEQAEPAGTA--DPGTAPAAPPV 494
                 :|..|  :|:|:|.|....:|::.::.....:.  |....|..|.|
  Rat   751 GLAVPEALDAIWKAEKILLVHCGPESDEVQELREMRSCLLDSSFTPVRPLV 801

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SmydA-9NP_572539.2 SET 26..>49 CDD:394802 9/26 (35%)
SET_SMYD <183..280 CDD:380997 26/144 (18%)
Smyd4NP_001099280.1 3a0801s09 7..>211 CDD:273380
TPR repeat 68..96 CDD:276809
TPR repeat 101..136 CDD:276809
SET 239..>269 CDD:394802 7/29 (24%)
zf-MYND 296..335 CDD:460312 7/38 (18%)
SET_SMYD4 418..600 CDD:380934 30/185 (16%)
TPR_12 661..728 CDD:315987 13/71 (18%)
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.