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Protein Alignment CG31076 and Snrpa1

DIOPT Version :10

Sequence 1:	NP_733184.2	Gene:	CG31076 / 318582	FlyBaseID:	FBgn0051076	Length:	182	Species:	Drosophila melanogaster
Sequence 2:	NP_001258252.1	Gene:	Snrpa1 / 100361269	RGDID:	2320494	Length:	255	Species:	Rattus norvegicus

Alignment Length:	148	Identity:	35/148 - (23%)
Similarity:	63/148 - (42%)	Gaps:	26/148 - (17%)

- Green bases have known domain annotations that are detailed below.

  Fly    31 DHVEQLDLSHNCLKDLSWLADFEQLRHLVLDSNRMHEAHLRTLTCPLPQLEVLMLNKN---EFSD 92
            |..:.:|.|.|.::.|.......:|:.|::::||:.... ..|...||.|..|:|..|   |..|
  Rat    42 DQFDAIDFSDNEIRKLDGFPLLRRLKTLLVNNNRICRIG-EGLDQALPCLTELILTNNSLVELGD 105

  Fly    93 LPTTMRLIRKFFPNLQYLSLHGNPICPDGLELQPFSTYLRYDYEYYSNYIAQSLSKLKFLDHGLV 157
            |.....|     .:|.|||:..||:.               :.::|..|:...:.:::.||...|
  Rat   106 LDPLASL-----KSLTYLSILRNPVT---------------NKKHYRLYVIYKVPQVRVLDFQKV 150

  Fly   158 QRTYKYESFPIKNYNGKQ 175
            :...:.|:  .|.:.||:
  Rat   151 KLKERQEA--EKMFKGKR 166

Known Domains:

Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 592.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.