DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG12106 and Commd3

DIOPT Version :9

Sequence 1:NP_572536.1 Gene:CG12106 / 31856 FlyBaseID:FBgn0030100 Length:211 Species:Drosophila melanogaster
Sequence 2:NP_680087.1 Gene:Commd3 / 12238 MGIID:88218 Length:195 Species:Mus musculus


Alignment Length:203 Identity:53/203 - (26%)
Similarity:79/203 - (38%) Gaps:28/203 - (13%)


- Green bases have known domain annotations that are detailed below.


  Fly    21 ISPTVVAGLKNL---GAIISLPLTKLLIA--NSLKLTLHPDATIAPVPELYAKNAACAKQSEYAV 80
            :|.:|..|::.|   |:..|.....||.|  .|| |....|......|.|...:....|....|.
Mouse     3 LSESVQRGIQTLADPGSFDSNAFALLLRAAFQSL-LDARADEAALDHPYLKQIDPVVLKHCHAAA 66

  Fly    81 VTLFALGTKHGWDGLQLRQQLEQLNLDAAAVDELSRVYEDSRKDLILRQLQIGHSFPHITDIQWR 145
            .|......||..|...|...||....|...::.....|::::..|......||.|.|||||:.||
Mouse    67 ATCILEAGKHQVDKSTLSTYLEDCKFDRERIELFCTEYQNNKNSLETLLGSIGRSLPHITDVSWR 131

  Fly   146 IVCDVKSSTSDCSTGAACFH--------INLGNFRQSSGERVTIVEFVCNAEELQSLINRLKE-- 200
            :...:|::.         .|        :.| |...:..:....:.|.||.|:||.|:.:||:  
Mouse   132 LEYQIKTNQ---------LHKMYRPGYLVTL-NVENNDSQSYPEINFSCNMEQLQDLVGKLKDAS 186

  Fly   201 --IERHCQ 206
              :||..|
Mouse   187 KSLERATQ 194

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG12106NP_572536.1 Commd3 112..210 CDD:240099 28/107 (26%)
Commd3NP_680087.1 Commd3 98..194 CDD:240099 27/105 (26%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C167833325
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_290EG
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 55 1.000 Inparanoid score I5437
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0009696
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 1 0.900 - - OOG6_106749
Panther 1 1.100 - - LDO PTHR31159
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R5287
SonicParanoid 1 1.000 - - X7431
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
1211.780

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