DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG12056 and Pgrmc1

DIOPT Version :9

Sequence 1:NP_572535.1 Gene:CG12056 / 31855 FlyBaseID:FBgn0030099 Length:287 Species:Drosophila melanogaster
Sequence 2:NP_058063.2 Gene:Pgrmc1 / 53328 MGIID:1858305 Length:195 Species:Mus musculus


Alignment Length:114 Identity:40/114 - (35%)
Similarity:57/114 - (50%) Gaps:8/114 - (7%)


- Green bases have known domain annotations that are detailed below.


  Fly    64 FTPAELAKFNGEEEGRPLYLALLGSVFDVSRGIKHYGSGCSYNFFVGRDAS--VSFISGDFETYD 126
            ||||||.:|:|.::.| :.:|:.|.||||::|.|.||....|..|.|||||  ::....|.|...
Mouse    73 FTPAELRRFDGVQDPR-ILMAINGKVFDVTKGRKFYGPEGPYGVFAGRDASRGLATFCLDKEALK 136

  Fly   127 PETADDVLTLKPDDLIGLAGWRDFYQKDYVYKGRVIGRFYDEKGALTTY 175
            .| .||:..|.|.....|:.|    ...:.:|...:|:...|....|.|
Mouse   137 DE-YDDLSDLTPAQQETLSDW----DSQFTFKYHHVGKLLKEGEEPTVY 180

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG12056NP_572535.1 Cyt-b5 63..>117 CDD:278597 26/54 (48%)
Pgrmc1NP_058063.2 Cyt-b5 72..136 CDD:278597 28/63 (44%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 173..195 3/8 (38%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1110
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
32.810

Return to query results.
Submit another query.