DRSC/TRiP Functional Genomics Resources

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Protein Alignment Bap111 and smarce1

DIOPT Version :9

Sequence 1:NP_572530.1 Gene:Bap111 / 31846 FlyBaseID:FBgn0030093 Length:749 Species:Drosophila melanogaster
Sequence 2:NP_001005436.1 Gene:smarce1 / 448018 XenbaseID:XB-GENE-482511 Length:435 Species:Xenopus tropicalis


Alignment Length:408 Identity:177/408 - (43%)
Similarity:245/408 - (60%) Gaps:41/408 - (10%)


- Green bases have known domain annotations that are detailed below.


  Fly    55 HSNY--GNPAFTPQKVTKSSSSKNQNESRLPKPPKPPEKPILPYMRYSKRVWDSVKAKHPELKLW 117
            ::||  |..|.:..:||.||.      ..:|||||||:||::||||||::|||.|||.:|:||||
 Frog    36 YNNYRLGGNAGSNSRVTASSG------ITIPKPPKPPDKPLMPYMRYSRKVWDQVKASNPDLKLW 94

  Fly   118 ELGKKIGAMWKLLPEDEKTEFIDEYEAEKLEYEKSLKAYHQTPAYQAYMSAKSKVKTDVDMHETP 182
            |:||.||.||:.|.::||.|:::||||||:||.:|:|.||.:|||.||::|||:.:..:   |..
 Frog    95 EIGKIIGGMWRDLTDEEKQEYLNEYEAEKIEYNESMKTYHNSPAYLAYINAKSRAEAAL---EEE 156

  Fly   183 SRGGGSKSQHERRID-------IQPAEDEDDQDEGYTTKHLAYARYLHNHRLINEIFSEAVVPDV 240
            ||      |.:.|:|       ||||||.||.|:|::.||.|.||:..|||||:||.||:|||||
 Frog   157 SR------QRQSRMDKGEPYMSIQPAEDPDDYDDGFSMKHSAAARFQRNHRLISEILSESVVPDV 215

  Fly   241 RSVVTTTRMQVLKRQVSSLTMHQTKLEAELQQMEEKFEAKKQRMVESSEAFQEELKRHC--KPAV 303
            ||||||.|||||||||.||.:||.||||||.|:|::.:.||::.:||:|:|..||||.|  |..|
 Frog   216 RSVVTTARMQVLKRQVQSLMVHQRKLEAELLQIEDRHQDKKRKFLESTESFNNELKRLCTLKVEV 280

  Fly   304 DEETFQKMVLRMYEDIK-----RDRQRLDEPNANANSAANPAAAAATAAA-APVTRSEE----AV 358
            |.:.....:.:..|..:     |:::..::...:.|:||..|||||.||| |.|..:||    .|
 Frog   281 DMDKIAAEIAQAEEQARKRQEEREKEAAEQAERSQNAAAVAAAAAAAAAAVAAVAAAEEEQEQEV 345

  Fly   359 KPPTQPGQPAATPAGQEPASAVPAPAAPPKETPPAVKPATLNPTPSSTPTPAPAVHVHE--TASK 421
            ..|.:..:....|...|...::| ||....|:....:..|..|....:...|....:.|  :.|.
 Frog   346 AKPEEKSEEEEAPMETEDTPSLP-PAEETSESQQNGEEGTSTPDDKESGQEAVDSTLDEGTSDSN 409

  Fly   422 TDPEPMD--IEPPPKPSV 437
            |..|...  :|.|...||
 Frog   410 TGSESNSGTVEEPTTDSV 427

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Bap111NP_572530.1 HMGB-UBF_HMG-box 95..154 CDD:238686 37/58 (64%)
smarce1NP_001005436.1 HMGB-UBF_HMG-box 70..131 CDD:238686 37/60 (62%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 106 1.000 Domainoid score I6535
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0006618
OrthoInspector 1 1.000 - - oto102760
Panther 1 1.100 - - LDO PTHR46232
Phylome 00.000 Not matched by this tool.
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R4242
SonicParanoid 1 1.000 - - X4858
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
66.130

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