DRSC/TRiP Functional Genomics Resources

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Protein Alignment Bap111 and hmg-3

DIOPT Version :9

Sequence 1:NP_572530.1 Gene:Bap111 / 31846 FlyBaseID:FBgn0030093 Length:749 Species:Drosophila melanogaster
Sequence 2:NP_491688.1 Gene:hmg-3 / 172250 WormBaseID:WBGene00001973 Length:689 Species:Caenorhabditis elegans


Alignment Length:208 Identity:50/208 - (24%)
Similarity:79/208 - (37%) Gaps:55/208 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly    25 GGGS------GGGSRSRSSGGGGGGDRNKDQTPIFTHSNYGNPAFTPQKVTKSSSSKNQNE---- 79
            |.||      ..||...:|   |.|:.:.|:..|           .|:| .:|...||:.|    
 Worm   493 GSGSEPDDEYDSGSEKDAS---GTGESDPDEENI-----------EPKK-KESKEKKNKREKKEK 542

  Fly    80 ---------SRLPKPPKPPEKPILPYMRYSKRVWDSVKAKHPELK-----LWELGKKIGAMWKLL 130
                     .:..|.|..|::....|:     :|  ..|....:|     |.::.||.||.||.:
 Worm   543 PVKEKAVKKGKKTKDPNEPKRATTAYI-----IW--FNANRNSMKEDGDTLGDVAKKAGAKWKSM 600

  Fly   131 PEDEKTEFIDEYEAEKLEYEKSLKAYHQTPAYQAYMSAKSKVKTDVDMHETPSRGGGSKSQHERR 195
            ..|:|.|:.|:...:|..||..:|.|.:........|..|..|:.   .::|.:...|| :|   
 Worm   601 SADDKKEWNDKAAQDKARYEAEMKEYKKNGGGVEKASGPSTKKSS---DQSPGKQFKSK-EH--- 658

  Fly   196 IDIQPAEDEDDQD 208
              |...:|.||.:
 Worm   659 --ISDTDDSDDDE 669

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Bap111NP_572530.1 HMGB-UBF_HMG-box 95..154 CDD:238686 18/63 (29%)
hmg-3NP_491688.1 POB3 20..497 CDD:227494 2/3 (67%)
SSrecog 75..285 CDD:281523
PH2_SSRP1-like 332..429 CDD:270051
HMGB-UBF_HMG-box 561..624 CDD:238686 19/69 (28%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C160160107
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.930

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