DRSC/TRiP Functional Genomics Resources

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Protein Alignment AP-1gamma and APL4

DIOPT Version :9

Sequence 1:NP_788891.2 Gene:AP-1gamma / 31842 FlyBaseID:FBgn0030089 Length:982 Species:Drosophila melanogaster
Sequence 2:NP_015354.1 Gene:APL4 / 856141 SGDID:S000006233 Length:832 Species:Saccharomyces cerevisiae


Alignment Length:972 Identity:278/972 - (28%)
Similarity:444/972 - (45%) Gaps:213/972 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly    48 LRDLIRQIRAARTAAEERAVVNKECAYIRSTFREEDSVWRCR--NIAKLLYIHMLGYPAHFGQLE 110
            ||..|:.:|.|:|.|:|||::.|:.|.||:..|::......|  ||.||||:::||...||||:|
Yeast     5 LRSFIKDVRGAKTLADERAIITKQSAKIRTKLRDDHLPHEKRRVNIQKLLYLYILGEKTHFGQVE 69

  Fly   111 CLKLTASTRFTDKRIGYLGAMLLLDERQDVHLLITNCLKNDLNSSTQFVVGLALCTLGAIASPEM 175
            .:.|.||..|.|||:|||.|.|||||.:|:..|:||.|.|||:...::.|.|||.:||.::|||:
Yeast    70 SINLIASDDFVDKRLGYLAATLLLDESEDLLTLLTNMLNNDLHHPNKYAVSLALTSLGFLSSPEL 134

  Fly   176 ARDLASEVERLMK-SPNTYIRKKATLCAFRVIRRVPELMEIF-LPATRSLLSEKN---HGILITG 235
            ||||..:||.::| |.:.::.|||..||.::|.:...|:||| :.....:||..:   ||:|: |
Yeast   135 ARDLYPDVENIIKNSRDPFLLKKALQCAAKLIFKDVSLLEIFNIEDITKILSSHSICTHGVLL-G 198

  Fly   236 VTLITEMCENSSDTL--MHFKKDSG--------NREIVPNLVRILK-------NLILGGYSPEHD 283
            ||.|.:     |..|  ::.|||..        :.:|:..|..:|:       |:......|.:|
Yeast   199 VTKIIQ-----SILLIGLNRKKDEDEDEDGIDYSNDILSPLSLLLRDFFIRLENMNSKNIEPGYD 258

  Fly   284 VSGVSDPFLQVKILRLLRIL--------GHNDPDASEAMNDILAQVATNTETSKNVGNTILYETV 340
            |.|:.|||||.:|:..|::.        .:|..|..:...|:|.::||||:::||.|..||||||
Yeast   259 VQGICDPFLQCEIIYTLKLYFQVGELLNSNNVLDYKDNFCDLLTRIATNTDSTKNSGQAILYETV 323

  Fly   341 LSIMDIRSEGGLRVLAVNILGRFLLNSDKNIRYVALNTLLRTVHADTSAVQRHRTTILECLKDPD 405
            .:|..:.....||||.:|||.:||...|.|.:||:|||||:.|..:.:||||||..|..||:|.|
Yeast   324 KTIFSLDLNQPLRVLGINILAKFLAGKDNNTKYVSLNTLLKVVPQEPTAVQRHRKFISHCLQDTD 388

  Fly   406 VSIRRRAMELSFALINAQNIRTMTKELLLFLEKADAEFKAQCSSGMILAAERYSPT--TR----- 463
            ||||.||:|||||:::..|:..:..||:.||.|.|.:.|    ..:|...:....|  ||     
Yeast   389 VSIRMRALELSFAILDDSNLVELVNELMKFLAKQDEDSK----DLIIYTIDHLIDTFDTRVVKDE 449

  Fly   464 -WHLDTQLSVLIAAGNYVRDD-------VVSSTIQLVSSSPVPEQTYITNRFWESLQVANHCEDK 520
             |.||...::|...|:::..:       ::::|.||...|....:....:....|.:::   |:.
Yeast   450 SWKLDVFFNILKLVGSFINYEKINDILIIINNTSQLSDKSEFLRKMLTISLNGTSAEIS---EEN 511

  Fly   521 QPLLQVAVWAIGEYGDLFMYGANEDEFERPTESDLIAVYYKFLTSAQVSTTSK--QYALVSLAKL 583
            .....|.:|.|||||||.:...|::..:...||. |..|...|.....:|..|  .|.|.:..||
Yeast   512 IGWQLVLIWCIGEYGDLVLNEGNKNGADIINESS-ITDYLLTLQELYTATNLKIINYILTAALKL 575

  Fly   584 STRLQQC--VEEIQALITSFGSHLNVDLQQRGVEFTQLFGHYKHLRPPLLEKMPAMQISRISSQN 646
            |.|....  :|:::.||.|:....::.||.:..::...|.....::..:||.||..:.......|
Yeast   576 SVRFHDAKNIEKLRQLILSYTDSTDLSLQMKSNQYEIFFNQSISVKKIILETMPKFEKITEEQDN 640

  Fly   647 GESGGGSFDDNSPDVIENGVEGGGGGGHSLIESNMNTLGDNTNILLDLLG--STDLSAGGAGDLV 709
            |::...:...|.|                            .::|.||||  |...|....||.|
Yeast   641 GKALSKNLISNEP----------------------------VDLLSDLLGEDSKAESKASTGDNV 677

  Fly   710 AATDLSNAVHKKNSRNANDVVAPVSNNQDLLDLLDLDLSAPSSTTTGAPAGGGGGGGIVALVGDN 774
            ...|:...:..:.    || :|.|..|.:..:.:                               
Yeast   678 KPIDILEEIFGEK----ND-IAQVPKNANKEESI------------------------------- 706

  Fly   775 NQSSAANMNNMLGGLDLGGFGSGLDSSASIPTNGNDL--ASMLGGLGAPPAASPSLAASAPVGNL 837
            |.|||...|                |..::|.:.|.:  :|.|.      ..:..|:|::.:.:|
Yeast   707 NHSSAVEAN----------------SGVTLPLDANKIYDSSSLN------VYASLLSANSGLAHL 749

  Fly   838 -IDGHAGSLLADLNPTAASNNVVVPPQGPRLTALDKDGLLVQLVSVRGSDCMRIYMTTTNNSDNT 901
             :...|.||::||....|      .|:..:||       |.||           |.::|.|:.. 
Yeast   750 DLYFQAKSLISDLKTFCA------VPKAQKLT-------LGQL-----------YPSSTINASQ- 789

  Fly   902 LDQYLLQAAVQRSFQLQMLTPSGSVLPPGGVITQEMRVVATSNATLRMRLRIQYVLDGQQQV 963
                                          :..|.:::  :.:..|::|:::.:.|:|...:
Yeast   790 ------------------------------ICKQSLKI--SGSGKLKLRVKLDFHLNGSSSI 819

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
AP-1gammaNP_788891.2 Adaptin_N 68..624 CDD:279882 211/606 (35%)
Alpha_adaptinC2 869..972 CDD:197886 11/95 (12%)
APL4NP_015354.1 Adaptin_N 21..617 CDD:396262 214/609 (35%)
Alpha_adaptinC2 727..828 CDD:197886 25/156 (16%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C157345349
Domainoid 1 1.000 299 1.000 Domainoid score I221
eggNOG 1 0.900 - - E1_COG4354
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 329 1.000 Inparanoid score I430
Isobase 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG53727
OrthoFinder 1 1.000 - - FOG0002071
OrthoInspector 1 1.000 - - oto99195
orthoMCL 1 0.900 - - OOG6_101228
Panther 1 1.100 - - LDO PTHR22780
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R2030
SonicParanoid 1 1.000 - - X1368
TreeFam 1 0.960 - -
1413.790

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