DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment AP-1gamma and AT5G49900

DIOPT Version :10

Sequence 1:NP_788891.2 Gene:AP-1gamma / 31842 FlyBaseID:FBgn0030089 Length:982 Species:Drosophila melanogaster
Sequence 2:NP_199801.2 Gene:AT5G49900 / 835053 AraportID:AT5G49900 Length:957 Species:Arabidopsis thaliana


Alignment Length:380 Identity:64/380 - (16%)
Similarity:119/380 - (31%) Gaps:120/380 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly   277 GYSPEHDVSGVSDPFL-----QVKILRLLRILGHNDPDAS--EAMNDILAQVATNTETSKNVGNT 334
            |.||.|.::||.:...     |:.:...:.:...||...|  |.|...|.::..:|.::...|..
plant   453 GSSPVHSLAGVREKKFSLDKSQLGLKNDIDVPHQNDTAVSVLEKMASTLEELHASTTSNSAFGTK 517

  Fly   335 ILYETVLSIMDIRSEGGLRVLAVNILGRFLLNSDKNIRYVALNT-----------------LLRT 382
            :|.|...:|                 |.||..  :.|.|...||                 |..:
plant   518 LLEEGEENI-----------------GHFLYL--EGIEYRMWNTYDVHFYASFALVMLFPKLELS 563

  Fly   383 VHAD-TSAVQRHRTTILECLKD-------------PDVSIRRRAMELS-FALINAQNIRTMTKEL 432
            :..| .:||..|..|.::.|.:             .|:.|.....|:: :.|.|....:.:..:.
plant   564 IQRDFAAAVMLHDPTKVKTLSEGQWVQRKVLGAVPHDLGINDPWFEVNGYTLHNTDRWKDLNPKF 628

  Fly   433 LLFLEKADAEFKAQCSSGMILAAERYSPTTRWHLDTQLSVLIAAGNYVRDDVVSSTIQLVSSSPV 497
            :|           |....::...::...:..|.     ||.:|.....:.|  .....::.:...
plant   629 VL-----------QVYRDVVATGDKKFASAVWP-----SVYVAMAYMAQFD--KDGDGMIENEGF 675

  Fly   498 PEQTYIT----------------------------------NRFWESLQVANHCEDKQPLLQVAV 528
            |:|||.|                                  :.||...|.|....:|:      :
plant   676 PDQTYDTWSASGVSAYCGGLWVAALQAASALARVVGDKNSQDYFWSKFQKAKVVYEKK------L 734

  Fly   529 WAIGEYGDLFMYGANEDEFERPTESDLIAVYYKFLTSAQVSTTSKQYALVSLAKL 583
            |    .|..|.|..:..::....::|.:|..:....|..:....:..|..:|.|:
plant   735 W----NGSYFNYDNSGSQYSSTIQADQLAGQWYARASGLLPIVDEDKARTALEKV 785

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
AP-1gammaNP_788891.2 Adaptin_N 68..624 CDD:396262 64/380 (17%)
Alpha_adaptinC2 869..972 CDD:197886
AT5G49900NP_199801.2 Glyco_hydr_116N 93..411 CDD:463496
DUF608 527..888 CDD:461391 46/289 (16%)
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.