DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment AP-1gamma and g

DIOPT Version :9

Sequence 1:NP_788891.2 Gene:AP-1gamma / 31842 FlyBaseID:FBgn0030089 Length:982 Species:Drosophila melanogaster
Sequence 2:NP_524785.2 Gene:g / 44819 FlyBaseID:FBgn0001087 Length:1034 Species:Drosophila melanogaster


Alignment Length:944 Identity:220/944 - (23%)
Similarity:356/944 - (37%) Gaps:283/944 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly    48 LRDLIRQIRAAR--------TAAEERAVVNKECAYIRSTFREEDSVWRCRNIAKLLYIHMLGYPA 104
            |.||:|.||..:        |..||          |:...|:::...:|..:|||.||.||||..
  Fly    19 LTDLVRGIRNNKDNEAKYISTCIEE----------IKQELRQDNISVKCNAVAKLTYIQMLGYDI 73

  Fly   105 HFGQLECLKLTASTRFTDKRIGYLGAMLLLDERQDVHLLITNCLKNDLNSSTQFVVGLALCTLGA 169
            .:.....:::.:|:|||.||||||.|........::.:|.||.::.||||..|:..|:||..|..
  Fly    74 SWAGFNIIEVMSSSRFTCKRIGYLAASQCFHPDSELLMLTTNMIRKDLNSQNQYDAGVALSGLSC 138

  Fly   170 IASPEMARDLASEVERLMKSPNTYIRKKATLCAFRVIRRVPELMEIFLPATRSLLSEKNHGILIT 234
            ..||:::||||:::..||.|...|:|.||.|..::|..|.||.:....|..:..|.:.:.|:...
  Fly   139 FISPDLSRDLANDIMTLMSSTKPYLRMKAVLMMYKVFLRYPEALRPAFPKLKEKLEDPDPGVQSA 203

  Fly   235 GVTLITEMC-ENSSDTL----MHFK--KDSGNREIVPNLVRILKNLILGGYSPEHDVSGVSDPFL 292
            .|.:|.|:. :|..:.|    :.||  ..|.|..:   |::|:|  :.|..:|       .:|.|
  Fly   204 AVNVICELARKNPKNYLPLAPIFFKLMTTSTNNWM---LIKIIK--LFGALTP-------LEPRL 256

  Fly   293 QVKILRLLRILGHNDPDASEAMNDILAQVATNTETSKNVGNTILYE---TVLSIMDIRSEG---- 350
            ..|::..|..|.|    ::.||                   ::|||   ||::::...|.|    
  Fly   257 GKKLIEPLTNLIH----STSAM-------------------SLLYECINTVIAVLISISSGMPNH 298

  Fly   351 -GLRVLAVNILGRFLLNSDKNIRYVALNTLLRTVHADTSAVQRHRTTILECLKDPDVSIRRRAME 414
             ....|.|..|...:.:||:|::|:.|..:.:.:.....:||.|:..||.||.|.|.|||.||::
  Fly   299 SASIQLCVQKLRILIEDSDQNLKYLGLLAMSKILKTHPKSVQAHKDLILACLDDKDESIRLRALD 363

  Fly   415 LSFALINAQNIRTMTKELLLFLEKADAE-------FKA--QCSSGMILAAERYSPTTRWHLDT-- 468
            |.:.:::.:|:..:.|.||..:|:|:..       :|.  .|:....|    |.....|:|..  
  Fly   364 LLYGMVSKKNLMEIVKRLLGHMERAEGSAYRDELLYKVIEICAQSSYL----YVTNFEWYLTVLV 424

  Fly   469 ---QLSVLIAAGNYVRDDV--VSSTIQLVSSSPVPEQTYITNRFWESLQVANHCEDKQPLLQVAV 528
               ||......|..:.:.:  |:..:.:|....|.|.|.:.:.|..|.|..:..|    :|..|.
  Fly   425 ELIQLEAGSRHGRLIAEQLLDVAIRVPVVRQFAVNEMTNLLDTFTVSAQSNSMYE----VLYAAA 485

  Fly   529 WAIGEYGDLFMYGANEDEFERPTESDLIAVYYKFLTSAQVSTTSKQYALVSLAKLSTRLQQCVE- 592
            |.:||:.     |..||     .|..|..:....|....:.....|..:...|:|:|   .|:| 
  Fly   486 WIVGEFA-----GELED-----AEKTLNILLRPRLLPGHIQGVYVQNVIKLFARLAT---TCLEL 537

  Fly   593 -EIQALIT----------SFGSHLNVDLQQR------------------------------GV-- 614
             ::..|:|          .|....::::|:|                              |:  
  Fly   538 QDLPGLVTLCDHVLDKLQHFNGSSDIEVQERANSACMLIEMLRNQLSTSTDAMAMDTTTEGGIPP 602

  Fly   615 -------EFTQLF-GHYKHLRPPLLEKMPAMQ-------ISRISSQNGESGGGSFDDNSPDVIEN 664
                   |.|.|| |....:.|....|:|...       |:....::..|...|..|.. ::..:
  Fly   603 LAIEIVQEMTLLFTGELIPVAPKAQRKVPLPDGLDLDEWINAPPPEDAASSSSSEHDKD-ELFVS 666

  Fly   665 GVEGGGG--GGHS-------------------LIESNMN---------TLG-------DN----- 687
            ..:.|.|  ||..                   |||.:.|         ..|       ||     
  Fly   667 ATQAGTGADGGEKRRQSLELTPEQLERQRMARLIEQSNNPHYLKSTPTASGASNADQYDNIDDIP 731

  Fly   688 -TNILLDLLGSTDLSAG----------------GAGDLVAATDLSNAVHK--KNSRNANDVVAPV 733
             |.:.||:.|...|..|                |:.|       ....||  |.|:.|.:.||..
  Fly   732 ITELPLDMEGVAALRVGITKRSDKYLQEQQAAQGSKD-------GKKKHKKGKKSKKAKNKVAYN 789

  Fly   734 SNNQD------------LLDL------------------------LDLDLSAPSSTTTGAPAGGG 762
            |:::.            .||:                        ||::|..   |...|||   
  Fly   790 SSSESEGEPKPLHIVNTTLDMPEGVSMSDSEDKDGKYDPNDPHRALDIELDI---TEFEAPA--- 848

  Fly   763 GGGGIVALVGDNNQSSAANMNNMLGGLDLGGFGS 796
                    |...::.|||:..|:....|..|.|:
  Fly   849 --------VRSASKKSAADKENLKTPADSAGGGN 874

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
AP-1gammaNP_788891.2 Adaptin_N 68..624 CDD:279882 160/638 (25%)
Alpha_adaptinC2 869..972 CDD:197886
gNP_524785.2 Adaptin_N 33..578 CDD:279882 157/610 (26%)
HEAT repeat 152..173 CDD:293787 8/20 (40%)
HEAT repeat 185..213 CDD:293787 6/27 (22%)
Cnd1 <193..266 CDD:289487 20/84 (24%)
HEAT repeat 221..263 CDD:293787 12/53 (23%)
HEAT repeat 272..290 CDD:293787 7/36 (19%)
HEAT repeat 302..331 CDD:293787 8/28 (29%)
BLVR 687..840 CDD:283923 27/159 (17%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG4354
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
21.810

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