DRSC/TRiP Functional Genomics Resources

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Protein Alignment AP-1gamma and apg-1

DIOPT Version :9

Sequence 1:NP_788891.2 Gene:AP-1gamma / 31842 FlyBaseID:FBgn0030089 Length:982 Species:Drosophila melanogaster
Sequence 2:NP_740937.1 Gene:apg-1 / 173304 WormBaseID:WBGene00000158 Length:829 Species:Caenorhabditis elegans


Alignment Length:959 Identity:456/959 - (47%)
Similarity:590/959 - (61%) Gaps:144/959 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly    26 MATIRQAFTEAVERVR------MPTPTRLRDLIRQIRAARTAAEERAVVNKECAYIRSTFREEDS 84
            |||..:...|.::..:      :.||.||||||||:|||||.|||||||::|.|.||.:||::||
 Worm     1 MATAVELAIEKIDEYKSKIGRTLGTPMRLRDLIRQVRAARTMAEERAVVDRESANIRESFRDDDS 65

  Fly    85 VWRCRNIAKLLYIHMLGYPAHFGQLECLKLTASTRFTDKRIGYLGAMLLLDERQDVHLLITNCLK 149
            .|:|||||||||||||||||||||:||:||.|..|||||||||||||||||||.:||:|:||.||
 Worm    66 PWKCRNIAKLLYIHMLGYPAHFGQMECMKLVAHPRFTDKRIGYLGAMLLLDERSEVHMLVTNSLK 130

  Fly   150 NDLNSSTQFVVGLALCTLGAIASPEMARDLASEVERLMKSPNTYIRKKATLCAFRVIRRVPELME 214
            |||..|||||.||||||||:|.|.||.||||:|||:::|..|.|::|||.|||||::|:||||||
 Worm   131 NDLTCSTQFVSGLALCTLGSICSAEMCRDLANEVEKIIKQNNAYLKKKAALCAFRIVRKVPELME 195

  Fly   215 IFLPATRSLLSEKNHGILITGVTLITEMCENSSDTLMHFKKDSGNREIVPNLVRILKNLILGGYS 279
            :|:|.|||||.|||||:|:...||:|||||.|.|.|.||||      :|||||||||||::.|||
 Worm   196 VFIPCTRSLLGEKNHGVLMGATTLVTEMCEKSPDVLNHFKK------LVPNLVRILKNLLMSGYS 254

  Fly   280 PEHDVSGVSDPFLQVKILRLLRILGHNDPDASEAMNDILAQVATNTETSKNVGNTILYETVLSIM 344
            |||||:|:||||||||||||||:||.:|...:|.||||||||||||||:|||||.|||||||:||
 Worm   255 PEHDVTGISDPFLQVKILRLLRVLGKDDVRVTEEMNDILAQVATNTETAKNVGNAILYETVLTIM 319

  Fly   345 DIRSEGGLRVLAVNILGRFLLNSDKNIRYVALNTLLRTVHADTSAVQRHRTTILECLKDPDVSIR 409
            :|:||.|||:||||||||||||:|||||||||||||:|||.|..||||||..::|||||||:|||
 Worm   320 EIKSESGLRILAVNILGRFLLNTDKNIRYVALNTLLKTVHVDYQAVQRHRNVVVECLKDPDISIR 384

  Fly   410 RRAMELSFALINAQNIRTMTKELLLFLEKADAEFKAQCSSGMILAAERYSPTTRWHLDTQLSVLI 474
            :|||||.|||:|..||..||||:|:|||.||||||::|:|.|.:|.|||||...|||||.::||.
 Worm   385 KRAMELCFALMNRTNIAIMTKEVLIFLETADAEFKSECASRMYIATERYSPNHEWHLDTMITVLR 449

  Fly   475 AAGNYVRDDVVSSTIQLVSSSPVPEQTYITNRFWESLQVANHCEDKQPLLQVAVWAIGEYGDLFM 539
            .||.||.|:|||..||::|::. ..|:|..::.:.:.|  ....:.|||||||.|.|||:|||.:
 Worm   450 LAGKYVPDEVVSCMIQMISANE-QLQSYAVSQLYHAAQ--KDAINAQPLLQVAFWTIGEFGDLLL 511

  Fly   540 YGANEDEFERP-TESDLIAVYYKFLTSAQVSTTSKQYALVSLAKLSTRLQQCVEEIQALITSFGS 603
            ...:.|  ..| :|:|::.|:...|.||..|..:|.|.:.:||||.||.|...:.|.||:....:
 Worm   512 QPTDVD--STPISENDVVGVFESVLPSALTSLWTKCYGVTALAKLGTRFQSTGDRIGALVRMNQA 574

  Fly   604 HLNVDLQQRGVEFTQLFGHYKHLRPPLLEKMPAMQISRISSQNGESGGGSFDDNSPDVIENGVEG 668
            |:.::||||.|||..:. :...||..|||:||.:..:.:::.            :|.:|:..|..
 Worm   575 HIQLELQQRSVEFNVIL-NLGDLRDGLLERMPVITHNSLNAA------------APSMIDEEVSA 626

  Fly   669 GGGGGHSLIESNMNTLGDNTNILLDLLGSTDLSAGGAGDLVAATDLSNAVHKKNSRNANDVVAPV 733
            ..|       :.:.|.|       ||||  ||:.||.|....:.|.|:                 
 Worm   627 ESG-------APVVTNG-------DLLG--DLNLGGGGSTNPSNDYSS----------------- 658

  Fly   734 SNNQDLLDLLDLDL--SAPSSTTTGAPAGGGGGGGIVALVGDNNQSSAANMNNMLGGLDLGGFGS 796
                   |||.:.:  .|.|:.....|........|:.:.||...|:||           |||..
 Worm   659 -------DLLGVGVGSGAASAQAPPPPPPPTSNSNILDIFGDTPSSNAA-----------GGFDF 705

  Fly   797 GLDSSASIPTNGNDLASMLGGLGAPPAASPSLAASAPVGNLIDGHAGSLLADLNPTAASNNVVVP 861
            |:                     |.||..|:.   .||                           
 Worm   706 GM---------------------AAPAKEPTY---QPV--------------------------- 719

  Fly   862 PQGPRLTALDKDGLLVQL--VSVRGSDCMRIYMTTTNNSDNTLDQYLLQAAVQRSFQLQMLTPSG 924
                  .|::|.|:.|||  :....::..|:.||..|.:..||..|...|||.::|::.:...|.
 Worm   720 ------IAINKGGIEVQLQVIETWKNEKARLRMTAYNYTPRTLSNYNFFAAVTKTFEIALEPASS 778

  Fly   925 SVLPPGGVITQEMRVVATS-NATLRMRLRIQYVLDGQQQVEQTEVSGFP 972
            ..:.|....||.|.:...: |.|.|||.:|.|::||.:||.:..|:.||
 Worm   779 PNIDPNEHTTQFMTITRKAPNTTARMRTKISYIVDGTEQVGEGVVNEFP 827

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
AP-1gammaNP_788891.2 Adaptin_N 68..624 CDD:279882 349/556 (63%)
Alpha_adaptinC2 869..972 CDD:197886 34/105 (32%)
apg-1NP_740937.1 Adaptin_N 45..595 CDD:279882 353/561 (63%)
Alpha_adaptinC2 721..827 CDD:197886 34/105 (32%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C160164012
Domainoid 1 1.000 695 1.000 Domainoid score I55
eggNOG 1 0.900 - - E1_COG4354
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H47995
Inparanoid 1 1.050 747 1.000 Inparanoid score I295
Isobase 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG53727
OrthoDB 1 1.010 - - D250202at2759
OrthoFinder 1 1.000 - - FOG0002071
OrthoInspector 1 1.000 - - oto20670
orthoMCL 1 0.900 - - OOG6_101228
Panther 1 1.100 - - LDO PTHR22780
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R2030
SonicParanoid 1 1.000 - - X1368
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
1716.800

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