DRSC/TRiP Functional Genomics Resources

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Protein Alignment Arfrp1 and Arl3

DIOPT Version :9

Sequence 1:NP_572526.1 Gene:Arfrp1 / 31841 FlyBaseID:FBgn0030088 Length:200 Species:Drosophila melanogaster
Sequence 2:NP_062692.1 Gene:Arl3 / 56350 MGIID:1929699 Length:182 Species:Mus musculus


Alignment Length:178 Identity:67/178 - (37%)
Similarity:99/178 - (55%) Gaps:30/178 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly    20 VVILGLDNAGKTTYLEAAKTTFTRNYKGLNPSKITTTVGLNIGTIDVQGVRLNFWDLGGQQELQS 84
            :::||||||||||.|:...:.        :.|.||.|.|.||.::..||.:||.||:|||::::.
Mouse    20 ILLLGLDNAGKTTLLKQLASE--------DISHITPTQGFNIKSVQSQGFKLNVWDIGGQRKIRP 76

  Fly    85 LWDKYYQESHGVIYVIDSNDRERMEESKAIFDKMIKNELLSGVPLLILANKQDLPDVMGVREIKP 149
            .|..|::.:..:||||||.||:|.||:.....::::.|.||.||:||.||||||.......||..
Mouse    77 YWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAAPASEIAE 141

  Fly   150 ----------VFQQAGALIGRRDCLTIPVSALHGEGVDEGIKWLVEAI 187
                      |:|       .:.|     |||.||||.:|:.|:.:.:
Mouse   142 GLNLHTIRDRVWQ-------IQSC-----SALTGEGVQDGMNWVCKNV 177

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Arfrp1NP_572526.1 small_GTP 17..181 CDD:272973 66/170 (39%)
Arfrp1 19..186 CDD:206725 67/175 (38%)
Arl3NP_062692.1 Arl3 3..176 CDD:206721 67/175 (38%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1271528at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.920

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