DRSC/TRiP Functional Genomics Resources

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Protein Alignment Arfrp1 and sar1a

DIOPT Version :10

Sequence 1:NP_572526.1 Gene:Arfrp1 / 31841 FlyBaseID:FBgn0030088 Length:200 Species:Drosophila melanogaster
Sequence 2:NP_988845.1 Gene:sar1a / 387599 XenbaseID:XB-GENE-944263 Length:198 Species:Xenopus tropicalis


Alignment Length:192 Identity:57/192 - (29%)
Similarity:95/192 - (49%) Gaps:25/192 - (13%)


- Green bases have known domain annotations that are detailed below.


  Fly     7 GFYKYMTQKDDYCVVILGLDNAGKTTYLEAAK-TTFTRNYKGLNPSKITTTVGLNIGTIDVQGVR 70
            |.||...:     :|.||||||||||.|...| ....::...|:|:....|:.         |:.
 Frog    20 GLYKKSGK-----LVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIA---------GMT 70

  Fly    71 LNFWDLGGQQELQSLWDKYYQESHGVIYVIDSNDRERMEESKAIFDKMIKNELLSGVPLLILANK 135
            ...:||||.::.:.:|..|....:|:::::|..|..|:.|||...:.::.:|.:|.||:|||.||
 Frog    71 FTTFDLGGHEQARRVWKNYLPAINGIVFLVDCVDHGRLMESKVELNALMTDETISNVPILILGNK 135

  Fly   136 QDLPDVMGVREIKPVFQQAGALIGR-----RDCLTIPV-----SALHGEGVDEGIKWLVEAI 187
            .|.|:.:...:::.:|...|...|:     :|....|:     |.|..:|..||.:||.:.|
 Frog   136 IDRPEAISEEKLREIFGLYGQTTGKGNVPLKDLNARPMEVFMCSVLKRQGYGEGFRWLSQYI 197

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Arfrp1NP_572526.1 Arfrp1 19..186 CDD:206725 53/177 (30%)
sar1aNP_988845.1 Sar1 3..197 CDD:206645 56/190 (29%)

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