DRSC/TRiP Functional Genomics Resources

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Protein Alignment Arfrp1 and arl6

DIOPT Version :9

Sequence 1:NP_572526.1 Gene:Arfrp1 / 31841 FlyBaseID:FBgn0030088 Length:200 Species:Drosophila melanogaster
Sequence 2:XP_031752440.1 Gene:arl6 / 100170493 XenbaseID:XB-GENE-940504 Length:193 Species:Xenopus tropicalis


Alignment Length:181 Identity:54/181 - (29%)
Similarity:89/181 - (49%) Gaps:20/181 - (11%)


- Green bases have known domain annotations that are detailed below.


  Fly    14 QKDDYCVVILGLDNAGKTTYLEAAKTTFTRNYKGLNPSKITTTVGLNIGTIDVQGVRLNFWDLGG 78
            :|.:..|:.|||||:||||.:...|..      ......|..|:|.:|.......:....:|:.|
 Frog    14 KKKEVHVLCLGLDNSGKTTIINKLKPA------NAQTQDIVPTIGFSIEKFKTSSLSFTVFDMSG 72

  Fly    79 QQELQSLWDKYYQESHGVIYVIDSNDRERMEESKAIFDKMIKNELLS--GVPLLILANKQDLPDV 141
            |...::||:.||:|...:|:||||:|:.||..:|...:.::.:..:.  .:|:|..|||.||.|.
 Frog    73 QGRYRNLWEHYYKEGQAIIFVIDSSDKLRMVVAKEELETLLNHADIKHRRMPVLFFANKMDLRDS 137

  Fly   142 MGVREIKPVFQQAGALIGRRD-----CLTIPVSALHGEGVDEGIKWLVEAI 187
            :...::    .|..:|...:|     |.:   ..|.|||:.||:.||.:.|
 Frog   138 LSSVKV----SQLLSLEHIKDKPWHICAS---DGLTGEGLQEGVDWLQDQI 181

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Arfrp1NP_572526.1 small_GTP 17..181 CDD:272973 50/170 (29%)
Arfrp1 19..186 CDD:206725 52/173 (30%)
arl6XP_031752440.1 Arl6 19..180 CDD:206722 52/173 (30%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1271528at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.010

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