DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CCT2 and TCP-1

DIOPT Version :9

Sequence 1:NP_572524.1 Gene:CCT2 / 31838 FlyBaseID:FBgn0030086 Length:535 Species:Drosophila melanogaster
Sequence 2:NP_188640.1 Gene:TCP-1 / 821544 AraportID:AT3G20050 Length:545 Species:Arabidopsis thaliana


Alignment Length:528 Identity:177/528 - (33%)
Similarity:303/528 - (57%) Gaps:30/528 - (5%)


- Green bases have known domain annotations that are detailed below.


  Fly    18 EKAEMARLSSFIGAIAIGDLVKSTLGPKGMDKILVATGRNAGHVEVTNDGATILRAVGVDNPAAK 82
            :..:..|..:.:...|:.::||::|||.|:||:||   .:.|.|.:|||||||||.:.|::||||
plant    15 QSGQDVRTQNVMACQAVSNIVKTSLGPVGLDKMLV---DDIGDVTITNDGATILRMLEVEHPAAK 76

  Fly    83 ILVDMSRVQDEEVGDGTTSVTVLASELLREAEKLVEQKLHPQIIVSGWRQATQVALEALTAAAQD 147
            :||:::.:||.|||||||||.::|:|||:.|..||..|:||..|:||:|.|.:   |:.....:.
plant    77 VLVELAELQDREVGDGTTSVVIVAAELLKRANDLVRNKIHPTSIISGYRLAMR---ESCKYIEEK 138

  Fly   148 NSSSDEKF-RNDLLNIARTTLSSKILHQHKDFFANLAVDAVMRLKGSGE-------LKSIQIIKK 204
            ..:..||. :..|:|.|:|::|||::....||||||.|:||:.:|.:.:       :|.|.|:|.
plant   139 LVTKVEKLGKVPLINCAKTSMSSKLISGDSDFFANLVVEAVLSVKMTNQRGEIKYPIKGINILKA 203

  Fly   205 SGGTLGDSFLDEGFLLDK-KPGVHQPQRIENARILIANTPMDTDKIKVFGSSIKVDSLAKIADLE 268
            .|.:..||:|..|:.|:. :.....|.|:..|:|...:..:...|::: |..:.|:...::..:.
plant   204 HGQSARDSYLLNGYALNTGRAAQGMPLRVSPAKIACLDFNLQKTKMQL-GVQVVVNDPRELEKIR 267

  Fly   269 MAEKEKMKEKVDKILKHKCNVFINRQLIYNYPEQLFADARVMSIEHADFDGIERLAYCTGGEIVS 333
            ..|.:..||:::|:||...||.:..:.|.:...:.|.:|..:::.....:.:..:|..||..:|:
plant   268 QREADMTKERIEKLLKAGANVILTTKGIDDMALKYFVEAGAIAVRRVRKEDMRHVAKATGATLVT 332

  Fly   334 TF------ENPSLVKLGECDVIEQVMIGEDTLLRFSGVKLGEACTIVIRGATQQILDEADRSLHD 392
            ||      |......||..|.:.:..|.:|.::...|.|...|.::::|||...:|||.:|:|||
plant   333 TFADMEGEETFDPAHLGSADEVVEERIADDDVILIKGTKTSSAVSLILRGANDYMLDEMERALHD 397

  Fly   393 ALCVLAATVKESRIIFGGGCSEALMATAVLKKAAETPGKEAIAIEAFARALLSLPTAIADNAGYD 457
            |||::..|::.:.::.|||..|:.::..:...|.....:|.:||..||.|||.:|..:|.||..|
plant   398 ALCIVKRTLESNTVVAGGGAVESALSVYLEHLATTLGSREQLAIAEFADALLIIPKVLAVNAAKD 462

  Fly   458 SAQLVSELRAGH--AQGK------QTLGLDMELGKVADVRELGITESFAVKRQVLMSASEAAEMI 514
            :.:||::|||.|  ||.|      .::|||:..|.:.:..|.|:.|....|.:::..|:|||..|
plant   463 ATELVAKLRAYHHTAQTKADKKHYSSMGLDLVNGTIRNNLEAGVIEPAMSKVKIIQFATEAAITI 527

  Fly   515 LRVDNIIR 522
            ||:|::|:
plant   528 LRIDDMIK 535

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CCT2NP_572524.1 PTZ00212 1..530 CDD:185514 177/528 (34%)
TCP1_beta 10..527 CDD:239452 177/528 (34%)
TCP-1NP_188640.1 TCP1_alpha 12..538 CDD:239451 177/528 (34%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0459
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG60896
OrthoDB 1 1.010 - - D335406at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
43.830

Return to query results.
Submit another query.