DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CCT2 and Bbs10

DIOPT Version :9

Sequence 1:NP_572524.1 Gene:CCT2 / 31838 FlyBaseID:FBgn0030086 Length:535 Species:Drosophila melanogaster
Sequence 2:NP_082190.1 Gene:Bbs10 / 71769 MGIID:1919019 Length:713 Species:Mus musculus


Alignment Length:583 Identity:102/583 - (17%)
Similarity:213/583 - (36%) Gaps:140/583 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly    22 MARLSSFIGAIAIGDLVKS----TLGPKGMDKILVATGRNAGHVEVTNDGATILRAVGVDNPAAK 82
            ||...|...|:.:.::::|    .:||:|..   |...:..|.|.::.||..:|.|:.:::|.|:
Mouse     1 MASQGSVTAALRVAEVLESIANRCVGPEGGQ---VLCTKPTGEVLLSRDGGCLLEALHLEHPLAR 62

  Fly    83 ILVDMSRVQDEEVGDGTTSVTVLASELLR-------------EAEKLVEQKLHPQIIVSGWRQAT 134
            ::|.......::.|||..:..:....|||             .:|.:...:.|       |:...
Mouse    63 MIVACVSSHLKKTGDGAKTFIIFLCHLLRGLHAIGEKGKDSFTSENIQSHERH-------WKNCC 120

  Fly   135 QVALEALTAAAQDNSSS------DEKFRNDLLNIARTTLSSKILHQHK----------------- 176
            |  .::::.|.|...:.      |.......|::..::...:.|.:|.                 
Mouse   121 Q--WKSISQALQTFQTQTLGCIVDRSLSRHYLSVFSSSTEGRKLCRHSLELLLEAYFCGRVGRNN 183

  Fly   177 -DFFANLAVDAVMRLKG--SG----ELKSIQIIKKSGGTLG----DSFLDEGFLLDKKPGVHQPQ 230
             .|.:.|..|.|.:...  ||    ||......:.:.|..|    ||.:.:|.:|.:...::.|.
Mouse   184 HRFISQLMCDYVFKCMACESGVEVFELLDHCFAELNVGVTGLPVSDSRIIDGLVLPRDFSMYCPA 248

  Fly   231 RIENARILIANTPMDTDKIKVFGSSIKVDSLAKIADLEMAEKEKMKEKVDKILKHKCNVFINRQL 295
            ..:...:::  |.:...:....||...::|..:.    .|.:..:.::...::.|.....:...|
Mouse   249 DGDIRMVIV--TEILQPQFSSAGSEFVLNSETQF----QASQCWITDRTKTVMNHLRGQNVKLLL 307

  Fly   296 I-YNYPEQLFADARVMSIEHADFDGIERLAYCTGGEIVSTFENPSLVKLGEC---DVIEQVMIGE 356
            . ...|:.:...||:.||.         :..|...|.||..:.  :..|..|   :|..|..|.:
Mouse   308 TSVKQPDLVIYCARLNSIS---------VVECLSAEEVSLVQR--ITGLSPCVLPEVASQCEISD 361

  Fly   357 DTLLRFSG---------VKLG--EAC-----TIVIRGATQQILDEADRSLHDALCVLAATVKESR 405
            .||::|..         |.||  ..|     ::|:.|....::::.:|:.|.|..:|.....:..
Mouse   362 STLVKFCKPLILRSKRYVHLGLISTCAFIPHSMVLCGPVLGLVEQHERAFHGAFKMLRQLFTDLD 426

  Fly   406 IIF----GGGCSEALMATAVLKKAAETPGKEAIA-IEAFARALLSLPTAIADNAGYDSAQLVSEL 465
            :.:    ...|:.:.:|....::...:|..:... |.|.::..|...|.:...:|..::.  :||
Mouse   427 LNYIIQTKQQCNPSPLAYDNSRERNHSPETDKYQDIVAKSKNKLETQTHLEVYSGLGASD--TEL 489

  Fly   466 RAGHAQGKQTLGLDMELGKVADVRELGITESFAVKRQVLMSASEAAEMILRVDNIIRCAPRRR 528
            |||                          :.::..::..::.|:..||       ::|.|..|
Mouse   490 RAG--------------------------KPWSAHKKTPIAPSQTDEM-------LKCLPPER 519

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CCT2NP_572524.1 PTZ00212 1..530 CDD:185514 102/583 (17%)
TCP1_beta 10..527 CDD:239452 101/580 (17%)
Bbs10NP_082190.1 chaperonin_like 7..>111 CDD:295468 22/106 (21%)
Cpn60_TCP1 13..>424 CDD:278544 79/439 (18%)
CNH 111..>209 CDD:295303 15/106 (14%)
chaperonin_like <587..695 CDD:295468
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0459
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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