DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CCT2 and Cct3

DIOPT Version :9

Sequence 1:NP_572524.1 Gene:CCT2 / 31838 FlyBaseID:FBgn0030086 Length:535 Species:Drosophila melanogaster
Sequence 2:NP_954522.1 Gene:Cct3 / 295230 RGDID:735038 Length:545 Species:Rattus norvegicus


Alignment Length:539 Identity:173/539 - (32%)
Similarity:292/539 - (54%) Gaps:37/539 - (6%)


- Green bases have known domain annotations that are detailed below.


  Fly     3 MSLNPVRVLKNEAQEEKAEMARLSSFIGAIAIGDLVKSTLGPKGMDKILVATGRNAGHVEVTNDG 67
            |...||.||....:.|.....:..:...|..|.|::::.||||.|.|:|:..   .|.:.:||||
  Rat     2 MGHRPVLVLSQNTKRESGRKVQSGNINAAKTIADIIRTCLGPKSMMKMLLDP---MGGIVMTNDG 63

  Fly    68 ATILRAVGVDNPAAKILVDMSRVQDEEVGDGTTSVTVLASELLREAEKLVEQKLHPQIIVSGWRQ 132
            ..|||.:.|.:||||.::::||.||||||||||||.:||.|:|..||..:||::||.:::|.:| 
  Rat    64 NAILREIQVQHPAAKSMIEISRTQDEEVGDGTTSVIILAGEMLSVAEHFLEQQMHPTVVISAYR- 127

  Fly   133 ATQVALEALTAAAQDNSSS-DEKFRNDLLNIARTTLSSKILHQHKDFFANLAVDAVMRLK----G 192
               :||:.:.:..:..|:. |...|:.:|||..:::::|::.:......|:|:|||..::    |
  Rat   128 ---MALDDMVSTLKKISTPVDVNNRDMMLNIINSSITTKVISRWSSLACNIALDAVKTVQFEENG 189

  Fly   193 SGEL---KSIQIIKKSGGTLGDSFLDEGFLLDKKPGVHQPQR--IENARILIANTPMDTDKIKVF 252
            ..|:   |..::.|..||.:.||.:..|.:::|.. .|...|  |:|.||::.::.::..|    
  Rat   190 RKEIDIKKYARVEKIPGGIIEDSCVLRGVMINKDV-THPRMRRYIKNPRIVLLDSSLEYKK---- 249

  Fly   253 GSS---IKVDSLAKIADLEMAEKEKMKEKVDKILKHKCNVFINRQLIYNYPEQLFADARVMSIEH 314
            |.|   |::........:...|:|.:::..:.|::.|.:|.|..:.|.:..:.....|.|.:|..
  Rat   250 GESQTDIEITREEDFTRILQMEEEYIQQLCEDIIQLKPDVVITEKGISDLAQHYLMRANVTAIRR 314

  Fly   315 ADFDGIERLAYCTGGEIVSTFENPSLVKLGECDV------IEQVMIGEDTLLRFSGVKLGEACTI 373
            .......|:|...|..|||..|     :|.|.||      :|...||::.....:..|..:||||
  Rat   315 VRKTDNNRIARACGARIVSRPE-----ELREDDVGTGAGLLEIKKIGDEYFTFITDCKDPKACTI 374

  Fly   374 VIRGATQQILDEADRSLHDALCVLAATVKESRIIFGGGCSEALMATAVLKKAAETPGKEAIAIEA 438
            ::|||:::||.|.:|:|.||:.|....:.:.:::.|||.||..:|.|:.:|:....|.|.....|
  Rat   375 LLRGASKEILSEVERNLQDAMQVCRNVLLDPQLVPGGGASEMAVAHALTEKSKAMTGVEQWPYRA 439

  Fly   439 FARALLSLPTAIADNAGYDSAQLVSELRAGHAQGK-QTLGLDMELGKVADVRELGITESFAVKRQ 502
            .|:||..:|..:..|.|..:.:|::.|||.|.|.. :|.|::.|.|.:.|::||||.|..|||.|
  Rat   440 VAQALEVIPRTLIQNCGASTIRLLTSLRAKHTQENCETWGVNGETGTLVDMKELGIWEPLAVKLQ 504

  Fly   503 VLMSASEAAEMILRVDNII 521
            ...:|.|.|.::||:|:|:
  Rat   505 TYKTAVETAVLLLRIDDIV 523

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CCT2NP_572524.1 PTZ00212 1..530 CDD:185514 173/539 (32%)
TCP1_beta 10..527 CDD:239452 170/532 (32%)
Cct3NP_954522.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..24 6/21 (29%)
chap_CCT_gamma 6..529 CDD:274085 172/535 (32%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 526..545
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0459
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

Return to query results.
Submit another query.