DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CCT2 and cct-3

DIOPT Version :9

Sequence 1:NP_572524.1 Gene:CCT2 / 31838 FlyBaseID:FBgn0030086 Length:535 Species:Drosophila melanogaster
Sequence 2:NP_494218.2 Gene:cct-3 / 173581 WormBaseID:WBGene00018782 Length:543 Species:Caenorhabditis elegans


Alignment Length:532 Identity:149/532 - (28%)
Similarity:285/532 - (53%) Gaps:30/532 - (5%)


- Green bases have known domain annotations that are detailed below.


  Fly     7 PVRVLKNEAQEEKAEMARLSSFIGAIAIGDLVKSTLGPKGMDKILVATGRNAGHVEVTNDGATIL 71
            |:.||....:.|.....::.:......|.|:::::|||:.|.|:|:..   .|.:.:||||..||
 Worm     8 PIIVLSQGTKRESGHQVQIGNINACKTIADVIRTSLGPRAMLKMLMDP---MGGIVMTNDGNAIL 69

  Fly    72 RAVGVDNPAAKILVDMSRVQDEEVGDGTTSVTVLASELLREAEKLVEQKLHPQIIVSGWRQATQV 136
            |.:.|.:||||.:::::|.||||.|||||||.:||.|::..|:..:|||.||.:|:..:||    
 Worm    70 REITVKHPAAKSMIEIARTQDEETGDGTTSVIILAGEVMAHAQTYLEQKTHPTLIIKAYRQ---- 130

  Fly   137 ALEALTAAAQDNSSSDEKFRND--LLNIARTTLSSKILHQHKDFFANLAVDAV--MRLKGSG--- 194
            |||.:...:::..|......:|  :..:.::.|.:|::.:..|...|:::.||  :|::.:|   
 Worm   131 ALEDMIQWSENKFSKTVDITDDAEIAKVVKSCLGTKMISKWMDLAVNISIQAVKTIRVEKAGVRE 195

  Fly   195 -ELKS-IQIIKKSGGTLGDSFLDEGFLLDKKPGVH--QPQRIENARILIANTPMDTDKIKVFG-- 253
             ::|. .:|.|..||.:.||.:.:|.:::|.. :|  ..:||||.||::.:..::..|    |  
 Worm   196 IDIKRYCRIEKIPGGRIEDSQVVKGIVVNKDI-LHAKMRRRIENPRIVLLDCNLEYKK----GES 255

  Fly   254 -SSIKVDSLAKIADLEMAEKEKMKEKVDKILKHKCNVFINRQLIYNYPEQLFADARVMSIEHADF 317
             :|:::.....|:.:...|::.::::.|:|:|.|.::....:.|.:..:.....|.:..:.....
 Worm   256 QTSLEIMREEDISAILEQEEQAIRKQCDEIIKLKPDLVFTEKGISDLAQHFLLKAGITCLRRLKK 320

  Fly   318 DGIERLAYCTGGEIVSTFENPSLVKLG-ECDVIEQVMIGEDTLLRFSGVKLGEACTIVIRGATQQ 381
            ....|||...|..:|....:.....:| :..:.|.|.|. |....:...:...|||:|:||.::.
 Worm   321 TDNNRLARVCGARVVHDTSDLRDEDVGTKAQLFEVVKIA-DEYYTYVTAETTTACTVVLRGPSKD 384

  Fly   382 ILDEADRSLHDALCVLAATVKESRIIFGGGCSEALMATAVLKKAAETPGKEAIAIEAFARALLSL 446
            :::|.:|:|.|:|.|:...:...:::.|||..|..::..:.::.|:..|.:....:|...||..:
 Worm   385 VINEVERNLQDSLHVVRNIMINPKLVPGGGALEMALSREIEQQGAKMDGVKKWPYKAIGLALEVI 449

  Fly   447 PTAIADNAGYDSAQLVSELRAGHAQGKQ--TLGLDMELGKVADVRELGITESFAVKRQVLMSASE 509
            |..:..|.|..:.:.::||||.|||..:  |.|:|...|.:.|:.:|.|.:..||:.|||.:|.|
 Worm   450 PRTLIQNCGGSTIRKMTELRAIHAQNAENWTFGVDGTSGDLVDMNKLEIWDPLAVRIQVLKTAIE 514

  Fly   510 AAEMILRVDNII 521
            .:.|:||:|:|:
 Worm   515 TSVMLLRIDDIV 526

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CCT2NP_572524.1 PTZ00212 1..530 CDD:185514 149/532 (28%)
TCP1_beta 10..527 CDD:239452 148/529 (28%)
cct-3NP_494218.2 chap_CCT_gamma 8..531 CDD:274085 149/532 (28%)
TCP1_gamma 8..528 CDD:239453 149/532 (28%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0459
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
32.810

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