DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CCT2 and cct6a

DIOPT Version :9

Sequence 1:NP_572524.1 Gene:CCT2 / 31838 FlyBaseID:FBgn0030086 Length:535 Species:Drosophila melanogaster
Sequence 2:NP_958447.1 Gene:cct6a / 116994 ZFINID:ZDB-GENE-011018-2 Length:531 Species:Danio rerio


Alignment Length:535 Identity:153/535 - (28%)
Similarity:281/535 - (52%) Gaps:35/535 - (6%)


- Green bases have known domain annotations that are detailed below.


  Fly     8 VRVLKNEAQEEKAEMARLSSFIGAIAIGDLVKSTLGPKGMDKILVATGRNAGHVEVTNDGATILR 72
            |:.|..:|:..:|..|...:...|..:.|::||.|||||..|:||:   .||.:::|.||..:|.
Zfish     4 VKALNPKAEVARAHAALAVNISAARGLQDVLKSNLGPKGTMKMLVS---GAGDIKLTKDGNVLLH 65

  Fly    73 AVGVDNPAAKILVDMSRVQDEEVGDGTTSVTVLASELLREAEKLVEQKLHPQIIVSGWRQATQVA 137
            .:.:.:|.|.::..::..||:..||||||..::..|||::|:..|.:.|||::|..|:..|...|
Zfish    66 EMQIQHPTASLIAKVATAQDDITGDGTTSNVLIIGELLKQADLYVSEGLHPRVIAEGFEAAKDKA 130

  Fly   138 LEALTAAAQDNSSSDEKFRNDLLNIARTTLSSKILHQHKDFFANLAVDAVMRLKGSGE---LKSI 199
            |    |..::...:.|..|..|:|:|||:|.:|:..:..|......||||:.::...|   |..:
Zfish   131 L----AVLEEVKVAKEMDRETLINVARTSLRTKVHTELADLLTEAVVDAVLAIRKPNEPIDLYMV 191

  Fly   200 QIIKKSGGTLGDSFLDEGFLLDKKPGVHQP---QRIENARILIANTPMDTDKIKV-----FGSSI 256
            :|::....|..|:.|..|.:||.  |...|   :|||:|.||..|..::.:|.:|     :.|:.
Zfish   192 EIMEMKHKTDSDTQLIRGLVLDH--GARHPDMKKRIEDAFILTCNVSLEYEKTEVNSGFFYKSAD 254

  Fly   257 KVDSLAKIADLEMAEKEKMKEKVDKI--LKHK-CN------VFINRQLIYNYPEQLFADARVMSI 312
            :.|.|.|      ||::.::::|.||  ||:| |.      |.||::.|..:.....|...::::
Zfish   255 ERDKLVK------AERKFIEDRVMKIIDLKNKVCADNKKGFVVINQKGIDPFSLDALAKEGIVAL 313

  Fly   313 EHADFDGIERLAYCTGGEIVSTFENPSLVKLGECDVIEQVMIGEDTLLRFSGVKLGEACTIVIRG 377
            ..|....:|||....||..:::.|:.:...||...::.:..:||:............:.|::::|
Zfish   314 RRAKRRNMERLTLACGGVAMNSVEDLTPECLGHAGLVYEYTLGEEKFTFIENCSNPRSVTLLVKG 378

  Fly   378 ATQQILDEADRSLHDALCVLAATVKESRIIFGGGCSEALMATAVLKKAAETPGKEAIAIEAFARA 442
            ..:..|.:...::.|.|..:...:::..::.|.|..|..:|.|::|...:..|:..:.::|||.|
Zfish   379 PNKHTLTQIKDAVRDGLRAVKNAIEDGSVVAGAGAFEVAVADALVKHKPKVKGRAQLGVQAFADA 443

  Fly   443 LLSLPTAIADNAGYDSAQLVSELRAGHAQGKQTLGLDMELGKVADVRELGITESFAVKRQVLMSA 507
            ||.:|..:|.|:|||..:.:.:|::...:..|.:|:|:..|:.....|.|:.::::||:|:|.|.
Zfish   444 LLVIPKVLAQNSGYDPQETLVKLQSEFKEAGQLVGVDLSTGEPMVAGEAGVWDNYSVKKQLLHSC 508

  Fly   508 SEAAEMILRVDNIIR 522
            :..|..||.||.|:|
Zfish   509 TVIASNILLVDEIMR 523

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CCT2NP_572524.1 PTZ00212 1..530 CDD:185514 153/535 (29%)
TCP1_beta 10..527 CDD:239452 152/533 (29%)
cct6aNP_958447.1 chap_CCT_zeta 3..530 CDD:274088 153/535 (29%)
TCP1_zeta 7..526 CDD:239458 152/532 (29%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.910

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