DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CCT2 and tcp1

DIOPT Version :9

Sequence 1:NP_572524.1 Gene:CCT2 / 31838 FlyBaseID:FBgn0030086 Length:535 Species:Drosophila melanogaster
Sequence 2:XP_002933907.1 Gene:tcp1 / 100487607 XenbaseID:XB-GENE-939843 Length:555 Species:Xenopus tropicalis


Alignment Length:541 Identity:188/541 - (34%)
Similarity:301/541 - (55%) Gaps:40/541 - (7%)


- Green bases have known domain annotations that are detailed below.


  Fly    16 QEEKAEMARLSSFIGAIAIGDLVKSTLGPKGMDKILVATGRNAGHVEVTNDGATILRAVGVDNPA 80
            :....|..|..:.:.|.:|.::|||:|||.|:||:||   .:.|.|.:||||||||:.:.|::||
 Frog    10 ERSTGEAVRSQNVMAAASIANIVKSSLGPVGLDKMLV---DDIGDVTITNDGATILKLLEVEHPA 71

  Fly    81 AKILVDMSRVQDEEVGDGTTSVTVLASELLREAEKLVEQKLHPQIIVSGWRQATQVAL----EAL 141
            ||:|.:::.:||.|||||||||.::|:|||:.|::||:||:||..::.|:|.|.:.|:    |.|
 Frog    72 AKVLCELADLQDNEVGDGTTSVVIIAAELLKNADELVKQKIHPTSVIGGYRLACKEAVRYINENL 136

  Fly   142 TAAAQDNSSSDEKFRNDLLNIARTTLSSKILHQHKDFFANLAVDAVMRL-----KGSGE--LKSI 199
            |.      ::||..:..|||.|||::||||:....|||:.:.|||.:.:     ||...  :.||
 Frog   137 TI------NTDELGKECLLNAARTSMSSKIIGVDSDFFSAMVVDAALAVKYVDPKGQARYPINSI 195

  Fly   200 QIIKKSGGTLGDSFLDEGFLLDKKPGVH-QPQRIENARILIANTPMDTDKIKVFGSSIKVDSLAK 263
            .::|..|.:..:|.|..|:.|:...|.. ..:||.||:|...:..:...|:|: |..:.:....|
 Frog   196 NVLKAHGRSQKESILVNGYALNCVVGSQSMNKRIVNAKIACLDFSLQKTKMKL-GVQVIISDPTK 259

  Fly   264 IADLEMAEKEKMKEKVDKILKHKCNVFINRQLIYNYPEQLFADARVMSIEHADFDGIERLAYCTG 328
            :..:...|.:..||::.|||....||.:....|.:...:.|.||..|::.......::|:|..||
 Frog   260 LDQIRQRESDITKERIQKILATGANVILTTGGIDDMCLKYFVDAGAMAVRRVLKKDLKRIAKATG 324

  Fly   329 GEIVSTFEN--------PSLVKLGECDVIEQVMIGEDTLLRFSGVKLGEACTIVIRGATQQILDE 385
            ..:.||..|        .|:  ||:.:.:.|..|.:|.|:.....|.....:|::|||...:.||
 Frog   325 AIMCSTLANLEGEESFEASM--LGQAEEVVQERICDDELILVKNTKARTCASIILRGANDFMCDE 387

  Fly   386 ADRSLHDALCVLAATVKESRIIFGGGCSEALMATAVLKKAAETPGKEAIAIEAFARALLSLPTAI 450
            .:||:||||||:...::...::.|||..||.::..:...|.....:|.:||..||||||.:|..:
 Frog   388 MERSVHDALCVVKRVLESKSVVPGGGAVEAALSIYLENYATSMGSREQLAIAEFARALLVIPKTL 452

  Fly   451 ADNAGYDSAQLVSELRAGHAQGK--------QTLGLDMELGKVADVRELGITESFAVKRQVLMSA 507
            |.||..||..||::|||.|.:.:        :.:|||:..||..|.::.|:.|...||.:.|..|
 Frog   453 AVNAAQDSTDLVAKLRAFHNEAQVNPERKNLKWIGLDLLNGKPRDNKQAGVFEPTLVKTKSLKFA 517

  Fly   508 SEAAEMILRVDNIIRCAPRRR 528
            :|||..|||:|::|:..|..:
 Frog   518 TEAAITILRIDDLIKLHPEAK 538

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CCT2NP_572524.1 PTZ00212 1..530 CDD:185514 188/541 (35%)
TCP1_beta 10..527 CDD:239452 188/538 (35%)
tcp1XP_002933907.1 TCP1_alpha 9..535 CDD:239451 187/536 (35%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D205390at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.010

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