DRSC/TRiP Functional Genomics Resources

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Protein Alignment APC4 and APC4

DIOPT Version :9

Sequence 1:NP_572522.2 Gene:APC4 / 31835 FlyBaseID:FBgn0052707 Length:775 Species:Drosophila melanogaster
Sequence 2:NP_010403.3 Gene:APC4 / 851696 SGDID:S000002525 Length:652 Species:Saccharomyces cerevisiae


Alignment Length:719 Identity:129/719 - (17%)
Similarity:234/719 - (32%) Gaps:225/719 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly    22 MEWNNKMDLIAYGTEKGEVVIQRLNWQKIVTFPTPGEDVRVRSLSWQMDET---LLAVGYSNGKV 83
            :::|....:.|....||..:.:..:..::...|....:: |.:..|  |.|   .|::.:.:|.:
Yeast    10 IDYNPLFPIFATRIAKGLAIYRVSDHARLAVIPIRNINL-VANYDW--DTTTGKFLSIFFKDGTI 71

  Fly    84 ALLDA-ESGTIISGL-IYEDDIKKVYFSK-AINSQENLGTYTCNVKDKHRRFLPKL--------- 136
            .:.|. :.|.::|.| |....|.|..:.: .:..:.|...:.||:.|.    ||||         
Yeast    72 RIHDIFKDGRLVSFLRIPSTKISKGIWDRIPLRYEPNNRDFACNIIDD----LPKLIRFVKDSKR 132

  Fly   137 ---QPMTNIDPCLKTLDQKSFPKGSPCFLVVIMRSGKVHLLLLGALQAGSIDLTQHILHPHEFDV 198
               .|.|..:...:..|:..........:.|:...|.                          |.
Yeast   133 INIVPYTQPNSLWRGPDEDDLDSNEKLDVHVVFNEGN--------------------------DK 171

  Fly   199 YDVRMNGDC------------NAIYALLRDGQELILLHFQNQVLQDC-MAPMLE------LATHC 244
            ..|..|||.            |::.::::.........:::..:|.. :.|:|:      |..:.
Yeast   172 ITVFFNGDYAVFLSVDNIENENSLKSIIKVQDGFYQCFYEDGTVQTLNLGPLLQSKSSVNLLNYI 236

  Fly   245 AHILETKNYINDTQQCLTEAWETVQLEMDNKLTRYANSQPYGVISAHFLELHVFGFATFEVEEFL 309
            ..|.|...|:....:.:.....|..|:...:|...|..  ||.:.:....|.:.|..:.::|::|
Yeast   237 MVIKELIGYMLTHLEFINRELATPYLDFVKRLCDEAYG--YGKLKSELEALFLLGEISCDLEDWL 299

  Fly   310 FETLSEKGFKK--------------------------------------IANSVDLSLSNLQSLV 336
            ..::.||.||:                                      .|.|:...||....|.
Yeast   300 CNSVGEKNFKRWKYLGCEAYQKTVQILTLIFVPACERIIIYVEKLRAILQAFSIQNKLSYTSDLT 364

  Fly   337 FKQ--LNGAAINMFYFLNTIAGFGRMSHFFESLISPDVANEAMRACGGFVLKVHELQRTIDTLAY 399
            ..:  |..:...:...||:|.|.||....||....            .|..::||      .|..
Yeast   365 AVEVLLKSSQKLLTMTLNSIIGLGRDETLFEKFFI------------WFNDRLHE------ALDE 411

  Fly   400 DMKL---FHAWMIFTILRLSHQEIPDDLVL----TEEENI----AMADFICAMEPELDDRSDDED 453
            |.||   |...:.|....||:    .|.:|    ||..:|    ...|.|.:|       ||.|.
Yeast   412 DYKLKFQFEDDLYFGYDLLSY----FDRILSKKGTEPSSIIDVKLYRDLINSM-------SDMEK 465

  Fly   454 ELDSQSQTPPPARSKFNLERVGQY----LDNAYLTQLYPRDPVQLWEEM-------------VTD 501
            ::         |:|..| ..:.|:    |......|.||...:.|.:.:             ||.
Yeast   466 DI---------AQSNVN-SHIQQHILVDLKTDVFAQKYPSSQINLLDAIKLPKHNYIVYLIQVTK 520

  Fly   502 NECL-------SNCKLFVP--HDVNLSLVQQRDKMFNAIDAVFHKPTESISGSFKVSST-VICND 556
            :...       :..||::.  .|.||.::.:...:  .|.|:|.        |:::||| .:.|.
Yeast   521 HNSAQEPFSEENKKKLYIGTLKDENLGIISKESSV--KIPALFK--------SYRLSSTRFVPNR 575

  Fly   557 LPPM---------------------EPGEDHRDRDLVTCTYYVNE-ASRTDMLACT----ISGQE 595
            :..:                     |..|:..|...:....|:.| ....|.:|||    :.|:.
Yeast   576 VHSLLRDIGLSDSNYHSSHVTDYRGENYENEEDDGTIAIPAYIRENRENDDFIACTAKVSVDGRS 640

  Fly   596 AMIL 599
            |.::
Yeast   641 ASLV 644

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
APC4NP_572522.2 ANAPC4_WD40 6..52 CDD:289649 4/29 (14%)
WD40 repeat 20..54 CDD:293791 4/31 (13%)
WD40 repeat 62..98 CDD:293791 10/40 (25%)
ANAPC4 222..418 CDD:289651 46/245 (19%)
APC4NP_010403.3 ANAPC4 223..411 CDD:403947 45/236 (19%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG4640
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - LDO PTHR13260
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
22.000

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