DRSC/TRiP Functional Genomics Resources

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Protein Alignment APC4 and LOC105947542

DIOPT Version :9

Sequence 1:NP_572522.2 Gene:APC4 / 31835 FlyBaseID:FBgn0052707 Length:775 Species:Drosophila melanogaster
Sequence 2:XP_031760433.1 Gene:LOC105947542 / 105947542 -ID:- Length:169 Species:Xenopus tropicalis


Alignment Length:112 Identity:28/112 - (25%)
Similarity:50/112 - (44%) Gaps:34/112 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly     7 MKLL-----GARNMSCIVERM--EWNNKMDLIAYGTEKGEVVIQRLNW---QKIVTFPTPGEDVR 61
            |||:     .::|:..::.||  ..::|:.|:...|:        |:|   .:::||        
 Frog     1 MKLVFSWNDKSQNLHYVIFRMLESSSSKVFLLGQLTD--------LSWGEIARLITF-------- 49

  Fly    62 VRSLSWQMDETLLAVGYS---NGKVALLDAESG--TIISGLIYEDDI 103
              ::|...::.||||...   ||..| .|.||.  :.:....|:|||
 Frog    50 --TVSRSRNDALLAVSIGNSLNGSAA-EDTESNSYSCLDACFYDDDI 93

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
APC4NP_572522.2 ANAPC4_WD40 6..52 CDD:289649 11/54 (20%)
WD40 repeat 20..54 CDD:293791 8/38 (21%)
WD40 repeat 62..98 CDD:293791 11/40 (28%)
ANAPC4 222..418 CDD:289651
LOC105947542XP_031760433.1 None
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D302186at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.010

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