DRSC/TRiP Functional Genomics Resources

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Protein Alignment HP1b and cbx6a

DIOPT Version :9

Sequence 1:NP_001162713.1 Gene:HP1b / 31834 FlyBaseID:FBgn0030082 Length:240 Species:Drosophila melanogaster
Sequence 2:XP_021325056.1 Gene:cbx6a / 799294 ZFINID:ZDB-GENE-040808-26 Length:488 Species:Danio rerio


Alignment Length:88 Identity:28/88 - (31%)
Similarity:38/88 - (43%) Gaps:13/88 - (14%)


- Green bases have known domain annotations that are detailed below.


  Fly     4 FSVERVEDKRTVNGRTEYYLKWKGYPRSENTWEPVENLDCPDLIANF-----EESLKNNKKE--- 60
            |:.|.:...|...|..||.:||||:....:||||.||:....||..|     |:.|...||.   
Zfish    11 FAAEAILKSRVRKGHIEYLVKWKGWALKHSTWEPEENILDDRLIKAFEQKEREQELYGPKKRGPK 75

  Fly    61 -----TKKRLSTSSTPESIRSKR 78
                 .|.|..:...|.|..::|
Zfish    76 PKNFVLKARAQSGDRPRSSYTRR 98

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
HP1bNP_001162713.1 CHROMO 3..52 CDD:214605 19/52 (37%)
Chromo_shadow 100..151 CDD:279701
cbx6aXP_021325056.1 Chromo 11..60 CDD:306815 19/48 (40%)
CBX7_C 432..463 CDD:319236
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1628171at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.920

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