DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment HP1b and cbx3a

DIOPT Version :9

Sequence 1:NP_001162713.1 Gene:HP1b / 31834 FlyBaseID:FBgn0030082 Length:240 Species:Drosophila melanogaster
Sequence 2:XP_005173826.1 Gene:cbx3a / 751689 ZFINID:ZDB-GENE-030131-1158 Length:177 Species:Danio rerio


Alignment Length:156 Identity:93/156 - (59%)
Similarity:113/156 - (72%) Gaps:10/156 - (6%)


- Green bases have known domain annotations that are detailed below.


  Fly     3 EFSVERVEDKRTVNGRTEYYLKWKGYPRSENTWEPVENLDCPDLIANFEESLKN--NKKETKKRL 65
            ||.||:|.|:|.|||:.|::|||||:..::|||||.||||||:|||.|.||.|.  .|.|..||.
Zfish    21 EFVVEKVMDQRVVNGKVEFFLKWKGFTDADNTWEPEENLDCPELIAAFLESQKGVVEKPEAVKRK 85

  Fly    66 STSSTPES--IRSKRKSFLEDDTEEQKKLIGFERGLEASKILGATDSSGHLMFLMKWKGSDHADL 128
            |::..||:  .::|||..:.|      |..||.|.||..:|:|||||||.||||||||.||.|||
Zfish    86 SSTDEPETEESKAKRKKEMSD------KPRGFARNLEPERIIGATDSSGELMFLMKWKDSDEADL 144

  Fly   129 VPAKLANTRCPQVVIQFYEERLTWHT 154
            |||:.|||||||:||.|||||||||:
Zfish   145 VPAREANTRCPQIVIAFYEERLTWHS 170

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
HP1bNP_001162713.1 CHROMO 3..52 CDD:214605 31/48 (65%)
Chromo_shadow 100..151 CDD:279701 39/50 (78%)
cbx3aXP_005173826.1 Chromo 23..71 CDD:278797 29/47 (62%)
Chromo_shadow 116..167 CDD:279701 39/50 (78%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170575834
Domainoid 1 1.000 91 1.000 Domainoid score I7663
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 183 1.000 Inparanoid score I3949
OMA 1 1.010 - - QHG52905
OrthoDB 1 1.010 - - D1628171at2759
OrthoFinder 1 1.000 - - FOG0000191
OrthoInspector 1 1.000 - - otm25057
orthoMCL 1 0.900 - - OOG6_104220
Panther 1 1.100 - - LDO PTHR22812
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R8954
SonicParanoid 1 1.000 - - X422
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
1413.940

Return to query results.
Submit another query.