DRSC/TRiP Functional Genomics Resources

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Protein Alignment HP1b and cbx6

DIOPT Version :10

Sequence 1:NP_572521.2 Gene:HP1b / 31834 FlyBaseID:FBgn0030082 Length:240 Species:Drosophila melanogaster
Sequence 2:NP_001016617.1 Gene:cbx6 / 549371 XenbaseID:XB-GENE-951161 Length:361 Species:Xenopus tropicalis


Alignment Length:79 Identity:28/79 - (35%)
Similarity:39/79 - (49%) Gaps:9/79 - (11%)


- Green bases have known domain annotations that are detailed below.


  Fly     4 FSVERVEDKRTVNGRTEYYLKWKGYPRSENTWEPVENLDCPDLIANFEESLKNNKKETKKRLSTS 68
            |:.|.:..:|...||.||.:||||:....:||||.||:....||..||:         |:|....
 Frog    11 FAAESIMKRRIRKGRIEYLVKWKGWAIKYSTWEPEENILDSRLIVAFEQ---------KEREQEI 66

  Fly    69 STPESIRSKRKSFL 82
            ..|:....|.|:||
 Frog    67 YGPKKRGPKPKTFL 80

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
HP1bNP_572521.2 CD_HP1_like 3..52 CDD:349281 20/47 (43%)
CSD 99..150 CDD:349275
cbx6NP_001016617.1 CD_Cbx6 8..65 CDD:349295 23/62 (37%)
CBX7_C 320..351 CDD:465385
Blue background indicates that the domain is not in the aligned region.

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