DRSC/TRiP Functional Genomics Resources

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Protein Alignment HP1b and Cbx6

DIOPT Version :9

Sequence 1:NP_001162713.1 Gene:HP1b / 31834 FlyBaseID:FBgn0030082 Length:240 Species:Drosophila melanogaster
Sequence 2:NP_083039.2 Gene:Cbx6 / 494448 MGIID:3512628 Length:414 Species:Mus musculus


Alignment Length:79 Identity:30/79 - (37%)
Similarity:42/79 - (53%) Gaps:9/79 - (11%)


- Green bases have known domain annotations that are detailed below.


  Fly     4 FSVERVEDKRTVNGRTEYYLKWKGYPRSENTWEPVENLDCPDLIANFEESLKNNKKETKKRLSTS 68
            |:.|.:..:|...||.||.:||||:....:||||.||:....|||.||:      ||.::.|   
Mouse    11 FAAESIIKRRIRKGRIEYLVKWKGWAIKYSTWEPEENILDSRLIAAFEQ------KEREREL--- 66

  Fly    69 STPESIRSKRKSFL 82
            ..|:....|.|:||
Mouse    67 YGPKKRGPKPKTFL 80

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
HP1bNP_001162713.1 CHROMO 3..52 CDD:214605 21/47 (45%)
Chromo_shadow 100..151 CDD:279701
Cbx6NP_083039.2 CHROMO 10..62 CDD:214605 23/56 (41%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 127..152
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 267..308
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 344..365
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1628171at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.920

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