DRSC/TRiP Functional Genomics Resources

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Protein Alignment HP1b and cbx7

DIOPT Version :9

Sequence 1:NP_001162713.1 Gene:HP1b / 31834 FlyBaseID:FBgn0030082 Length:240 Species:Drosophila melanogaster
Sequence 2:NP_001005071.1 Gene:cbx7 / 448638 XenbaseID:XB-GENE-942584 Length:245 Species:Xenopus tropicalis


Alignment Length:189 Identity:44/189 - (23%)
Similarity:62/189 - (32%) Gaps:98/189 - (51%)


- Green bases have known domain annotations that are detailed below.


  Fly     4 FSVERVEDKRTVNGRTEYYLKWKGYPRSENTWEPVENLDCPDLIANFEESLKNNKKETKKRLS-- 66
            |:||.:..||...|:.||.:||||:|...:||||.|::..|.|:..:||      ||.|:|.|  
 Frog    11 FAVESIRKKRIRKGKVEYLVKWKGWPPKYSTWEPEEHILDPRLVLAYEE------KEEKERASGC 69

  Fly    67 -------------------------------------------------TSSTPESIRS------ 76
                                                             |||.||..:|      
 Frog    70 RKRGPKPKRLLLQRLYSMDLRSAHKSKERNLCFSLSRRFNPALGGKTTPTSSVPEKAKSLQFPLS 134

  Fly    77 -----------KRKSFL-----------------EDDTEEQKKLIGF-------ERGLE 100
                       .||.||                 |::.||.:.:..:       |:|||
 Frog   135 KQRKGRKFLCLSRKKFLRVSTYEPLSRRSDFFAKEEEKEETETIPDWQEEKSMEEQGLE 193

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
HP1bNP_001162713.1 CHROMO 3..52 CDD:214605 20/47 (43%)
Chromo_shadow 100..151 CDD:279701 1/1 (100%)
cbx7NP_001005071.1 CD_Cbx7 7..62 CDD:349293 23/56 (41%)
CBX7_C 202..234 CDD:375056
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1628171at2759
OrthoFinder 1 1.000 - - FOG0000191
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
32.920

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