DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment HP1b and Cdyl

DIOPT Version :10

Sequence 1:NP_572521.2 Gene:HP1b / 31834 FlyBaseID:FBgn0030082 Length:240 Species:Drosophila melanogaster
Sequence 2:XP_017456089.1 Gene:Cdyl / 361237 RGDID:1549745 Length:617 Species:Rattus norvegicus


Alignment Length:241 Identity:53/241 - (21%)
Similarity:90/241 - (37%) Gaps:68/241 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly     2 AEFSVERVEDKR-TVNGRTEYYLKWKGYPRSENTWEPVENL-DCPDLIANFEESLKNNKKE---- 60
            ||..||.:.||| ...|:|||.::||||...::||||.::| :|.:.|.:|.......:||    
  Rat    53 AETQVESIVDKRKNKKGKTEYLVRWKGYDSEDDTWEPEQHLVNCEEYIHDFNRRHNERQKEGTLA 117

  Fly    61 TKKRLSTSSTPESIRSKRKSFLEDDTEEQKKLIGFERGLEASKILGATDSSGHLMFLMKWKGSDH 125
            ...|.|.|:..:.|.....|.| ..|..:..::|.:...:.:::|..:.                
  Rat   118 RANRASPSNARKQISRSTHSAL-SKTNPKALVVGKDHESKTNQLLATSQ---------------- 165

  Fly   126 ADLVPAKLANTRCPQVVIQFYEERLTWHTGSGNGNGNTNSVNLGSSGGLGSVGGSGAGDDTAPGS 190
                  |......|.:                   .|..:::|..||....|..|          
  Rat   166 ------KFRKNTAPSL-------------------ANRKNMDLAKSGIKILVPKS---------- 195

  Fly   191 VGTTGGGSNIDGGDEEDPEPASPIGSINQ--DENIKPDESSELDNG 234
              ...|.::|||...|.||      .::|  ::.:.|:.::|...|
  Rat   196 --PIKGRTSIDGFHGESPE------KLDQGAEDTVTPEVTAEKPTG 233

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
HP1bNP_572521.2 CD_HP1_like 3..52 CDD:349281 22/50 (44%)
CSD 99..150 CDD:349275 3/50 (6%)
CdylXP_017456089.1 CD_CDY 56..105 CDD:349284 21/48 (44%)
crotonase-like 363..559 CDD:119339
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.