Protein Alignment HP1b and Cbx1

DIOPT Version :10

• Sequence 1: NP_572521.2
• Gene: HP1b / 31834
• FlyBaseID: FBgn0030082
• Length: 240
• Species: Drosophila melanogaster
• Sequence 2: XP_006247295.1
• Gene: Cbx1 / 360609
• RGDID: 1310714
• Length: 193
• Species: Rattus norvegicus
• Alignment Length: 166
• Identity: 92/166 - (55%)
• Similarity: 110/166 - (66%)
• Gaps: 19/166 - (11%)

  Fly     3 EFSVERVEDKRTVNGRTEYYLKWKGYPRSENTWEPVENLDCPDLIANFEESLK----NNKKETKK 63
            |:.||:|.|:|.|.|:.||.|||||:...:|||||.||||||||||.|.:|.|    .:|.:..|
  Rat    20 EYVVEKVLDRRVVKGKVEYLLKWKGFSDEDNTWEPEENLDCPDLIAEFLQSQKTAHETDKSDGGK 84

  Fly    64 RLSTSST----PESIRSKRKS------FLEDDTEEQKKLIGFERGLEASKILGATDSSGHLMFLM 118
            |.:.|.:    .||...|:|.      ||:.:     |..||.||||..:|:|||||||.|||||
  Rat    85 RKADSDSEDKGEESKPKKKKEEALPIWFLQSE-----KPRGFARGLEPERIIGATDSSGELMFLM 144

  Fly   119 KWKGSDHADLVPAKLANTRCPQVVIQFYEERLTWHT 154
            |||.||.|||||||.||.:||||||.|||||||||:
  Rat   145 KWKNSDEADLVPAKEANVKCPQVVISFYEERLTWHS 180

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
HP1b	NP_572521.2	CD_HP1_like	3..52	CDD:349281	31/48 (65%)
		CSD	99..150	CDD:349275	39/50 (78%)
Cbx1	XP_006247295.1	CD_HP1beta_Cbx1	20..69	CDD:349297	31/48 (65%)
		CSD_HP1beta_Cbx1	120..177	CDD:349301	44/56 (79%)