DRSC/TRiP Functional Genomics Resources

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Protein Alignment HP1b and Cbx6

DIOPT Version :10

Sequence 1:NP_572521.2 Gene:HP1b / 31834 FlyBaseID:FBgn0030082 Length:240 Species:Drosophila melanogaster
Sequence 2:NP_001387975.1 Gene:Cbx6 / 315136 RGDID:1307314 Length:414 Species:Rattus norvegicus


Alignment Length:79 Identity:30/79 - (37%)
Similarity:42/79 - (53%) Gaps:9/79 - (11%)


- Green bases have known domain annotations that are detailed below.


  Fly     4 FSVERVEDKRTVNGRTEYYLKWKGYPRSENTWEPVENLDCPDLIANFEESLKNNKKETKKRLSTS 68
            |:.|.:..:|...||.||.:||||:....:||||.||:....|||.||:      ||.::.|   
  Rat    11 FAAESIIKRRIRKGRIEYLVKWKGWAIKYSTWEPEENILDSRLIAAFEQ------KEREREL--- 66

  Fly    69 STPESIRSKRKSFL 82
            ..|:....|.|:||
  Rat    67 YGPKKRGPKPKTFL 80

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
HP1bNP_572521.2 CD_HP1_like 3..52 CDD:349281 21/47 (45%)
CSD 99..150 CDD:349275
Cbx6NP_001387975.1 CD_Cbx6 8..65 CDD:349295 24/59 (41%)
CBX7_C 359..390 CDD:465385
Blue background indicates that the domain is not in the aligned region.

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