DRSC/TRiP Functional Genomics Resources

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Protein Alignment HP1b and chp2

DIOPT Version :9

Sequence 1:NP_001162713.1 Gene:HP1b / 31834 FlyBaseID:FBgn0030082 Length:240 Species:Drosophila melanogaster
Sequence 2:NP_596808.1 Gene:chp2 / 2540047 PomBaseID:SPBC16C6.10 Length:380 Species:Schizosaccharomyces pombe


Alignment Length:213 Identity:51/213 - (23%)
Similarity:86/213 - (40%) Gaps:75/213 - (35%)


- Green bases have known domain annotations that are detailed below.


  Fly     3 EFSVERVEDKRTVNGRT--EYYLKWKGY-PRSENTWEPVENLDC-----------------PDL- 46
            ||:||.:.|.|.....:  :|||||:|| ..|:|||...|  ||                 ||| 
pombe   175 EFAVEMILDSRMKKDGSGFQYYLKWEGYDDPSDNTWNDEE--DCAGCLELIDAYWESRGGKPDLS 237

  Fly    47 -----------------------IANFEESLKNNKKETKKR-----------LSTSSTPESIRSK 77
                                   .:|.::|:...::.::..           ||.||..|. :||
pombe   238 SLIRLTRSRARSSNEASYVEKDESSNSDDSISYKRRRSRNAANRITDYVDSDLSESSMKEK-QSK 301

  Fly    78 RKSFLEDDTEE-------QKKLIGFERGLEASKILGATDSSGHLMFLMKWKG---SDHADLVPAK 132
            .:.:::.|...       |||  .:|..::..|.:...| :|.|:..:|||.   |.|.:::   
pombe   302 IEKYMKSDKSSKNFKPPFQKK--SWEDLVDCVKTVQQLD-NGKLIAKIKWKNGYVSTHDNII--- 360

  Fly   133 LANTRCPQVVIQFYEERL 150
             .:.:||..:|::||..:
pombe   361 -IHQKCPLKIIEYYEAHI 377

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
HP1bNP_001162713.1 CHROMO 3..52 CDD:214605 24/92 (26%)
Chromo_shadow 100..151 CDD:279701 14/54 (26%)
chp2NP_596808.1 CHROMO 174..228 CDD:237991 20/54 (37%)
ChSh 316..380 CDD:197638 18/69 (26%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1911
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR22812
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
54.870

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