DRSC/TRiP Functional Genomics Resources

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Protein Alignment HP1b and cec-1

DIOPT Version :9

Sequence 1:NP_001162713.1 Gene:HP1b / 31834 FlyBaseID:FBgn0030082 Length:240 Species:Drosophila melanogaster
Sequence 2:NP_498862.1 Gene:cec-1 / 176190 WormBaseID:WBGene00000414 Length:304 Species:Caenorhabditis elegans


Alignment Length:274 Identity:53/274 - (19%)
Similarity:92/274 - (33%) Gaps:112/274 - (40%)


- Green bases have known domain annotations that are detailed below.


  Fly     4 FSVERVEDKRTVNGRTEYYLKWKGYPRSENTWEPVENLDCPDLIANF--------------EESL 54
            ::||.:.:.|...|::|:|:||.||..:.|:|||.||:..|.||..|              ::.:
 Worm     8 YTVESILEHRKKKGKSEFYIKWLGYDHTHNSWEPKENIVDPTLIEAFFTREAARKAEIKAKKDKM 72

  Fly    55 KNNKKETKKRLSTS------ST------------PESIRSKRKSFL------EDDTEEQKKLIGF 95
            ...||....:.|.|      ||            |:....||:...      :.||:|:..    
 Worm    73 AAGKKGASSKASASVSKASASTPARGAKAAPKPPPKKSPPKRQRLAGGDIRPDSDTDEEHS---- 133

  Fly    96 ERGLEASKILGATDSSGHLMFLMKWKGSDHADLVPAKLANTRCPQVVIQFYEERLTWHTGSGNGN 160
                .|.|...|.|..         :..|..:.||.|      .:.|.:..||.           
 Worm   134 ----SADKKSKAEDEE---------EVEDDEEPVPKK------KKEVQEEPEEE----------- 168

  Fly   161 GNTNSVNLGSSGGLGSVGGSGAGDDTAPGSVGTTGGGSNIDGGDEEDPEPASPIGSINQDENIKP 225
                                                 .:::|.|||:   :..:..:.:||.::.
 Worm   169 -------------------------------------ESVEGEDEEE---SQEVEDLKEDEKMEE 193

  Fly   226 DESSELDNGQPDAD 239
            ||..|.::.|.:::
 Worm   194 DEKEEEEDVQLESE 207

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
HP1bNP_001162713.1 CHROMO 3..52 CDD:214605 20/61 (33%)
Chromo_shadow 100..151 CDD:279701 11/50 (22%)
cec-1NP_498862.1 CHROMO 8..59 CDD:214605 20/50 (40%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1628171at2759
OrthoFinder 1 1.000 - - FOG0000191
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X422
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
54.920

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