DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment rdgA and LOC567728

DIOPT Version :9

Sequence 1:NP_001259366.1 Gene:rdgA / 31826 FlyBaseID:FBgn0261549 Length:1462 Species:Drosophila melanogaster
Sequence 2:XP_021334575.1 Gene:LOC567728 / 567728 -ID:- Length:893 Species:Danio rerio


Alignment Length:1027 Identity:277/1027 - (26%)
Similarity:401/1027 - (39%) Gaps:262/1027 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly   207 YSNTSSEASEDE-DEVEG------HNAEEEEEGSAAIEDAEEETTEAATEEADEDPR-------T 257
            ||..||:..:|. :|..|      :|.|::::......|.|.......|...::.|.       |
Zfish    18 YSEYSSKKLKDVLEEFHGNGVLSKYNPEQKQDVLNQPIDYEGFQLFMTTYLENDIPEELCKHLFT 82

  Fly   258 EVESEH--DHDPDDDAALEMDIRIGNMSQGSSIEESRARLPRQMRRHTIGSSSVTSASEDEGLEG 320
            ..:|::  :..||...|....:...::..|.||:...|..|..    .:...|:.||......|.
Zfish    83 SFKSKNGGEGSPDTSRAGAGILEPKSIDAGISIQTEVACAPIT----GMNGKSILSAMSRHTAES 143

  Fly   321 SDNGSPHFGNTLLPPQPTTPCG--ITFTLSPTNGDYPSPPHLPLDPGSPPISPC-SSNSGRLPAL 382
            |...:|..|.|      |:||.  .:...|.|.|..|..||  ..||:.|..|. ||:|....||
Zfish   144 SAGITPGSGAT------TSPCSSRSSSQRSGTGGHTPRGPH--RSPGTQPKPPTGSSSSSNALAL 200

  Fly   383 APIISTPCSSADADDAGAAMGLPVRARRRSISRQ------EAIFV-------------------- 421
            :...::|..|.:.:.:.....|     |||.|.|      :.:|:                    
Zfish   201 SKTSNSPRLSPERNQSENRTSL-----RRSPSPQKGSPSPQVVFLKDIVCYLSLLERGTPEDKLE 260

  Fly   422 ------EPTGNSLENVSHEEVDNSNTKSSVDTADSLDEASTMATCGSPGAAGGSGASSSHHNAFV 480
                  :..||.|  :...|:|.. ....|..|:.|:..||.                       
Zfish   261 FMFRLYDTDGNGL--LDSSELDRI-INQMVHVAEYLEWDSTE----------------------- 299

  Fly   481 VRDIYLMVPDLKRDRAASVDSCFSKLSSNAKTEELQPSADGCFLTVPNINATRSRSVDIVLPTDE 545
                  :.|.||.                 ..||:....||                        
Zfish   300 ------LRPILKE-----------------MMEEIDYDRDG------------------------ 317

  Fly   546 QARYKALSMTGSTVTYAD----GRTASASNSRRPIRIVPDWTENAVQ-GEHYWKPTSASGDLCCL 605
                        |||..:    |.|..      |:.::.....|..: |:|.||....:....|.
Zfish   318 ------------TVTLEEWIRGGMTTI------PLLVLLGMETNVQEDGQHIWKLKHFNKPAYCN 364

  Fly   606 NEECIKSGQRMK---CSACQLVAHHNCIPFVNEKSTLACKPTYRDVGIRQYREQTTTHHHWVHRK 667
            ....:..|.|.:   |:.|:...|..|:    .|....|..||    .:..|......|.|:...
Zfish   365 YCHTMLLGVRKQGLCCALCKYTVHERCV----SKDIAPCISTY----AKSRRHTNAMQHVWMEGN 421

  Fly   668 LEKGKCKQCGKFFPMKQAVQSKLFGSKEIVALACAWCHEIYHNKEACFNQAKIGEECRLGNYAPI 732
             ...||.:|.:.....|.          :..|.|.||....|||  |.:..|  .||..|.....
Zfish   422 -SSAKCDKCHRSIKCYQG----------LTGLHCVWCQITLHNK--CASNMK--PECDGGPLRDH 471

  Fly   733 IVPPSWIVKLPTKGNFKSSIRVSNKNNAASGSGGGGAGGGAGGGGGKSKKQTQRRQKGKEEK--K 795
            .:.||:|..:           |.::::|..            .|.|:|...|.....|:..|  .
Zfish   472 TLLPSYICPV-----------VLDRHSAVK------------RGEGESSPSTSPEDTGQCFKFTG 513

  Fly   796 EPRAFIVKPIPSPEVIPVIVFINPKSGGNQGHKLLGKFQHLLNPRQVFDLTQGGPKMGLDMFRKA 860
            :.:|..:.|:|...  |::|.:||||||.||.::|.|||:|||||||:.|.:|||..||:.||..
Zfish   514 DGQALQITPLPGTH--PLLVLVNPKSGGRQGERVLRKFQYLLNPRQVYSLERGGPMAGLNFFRDV 576

  Fly   861 PNLRVLACGGDGTVGWVLSVLDQIQPPLQPAPAVGVLPLGTGNDLARALGWGGSIFFQGYTDEPI 925
            |:.|||||||||:|||:|..:|:..  ....|.|.:|||||||||||.|.|||     ||....:
Zfish   577 PDFRVLACGGDGSVGWILDCIDKAS--FARHPPVAILPLGTGNDLARCLRWGG-----GYEGGSL 634

  Fly   926 GKILREIGMSQCVLMDRWRVKVTPNDDVTDDHVDRSKPNVPLNVINNYFSFGVDAHIALEFHEAR 990
            .|.||:|..|..||:|||.:.:.|     ||..::..| ||.:::|||||.||||.||..||..|
Zfish   635 VKFLRDIEHSTEVLLDRWNIDIVP-----DDKEEKGDP-VPYSIVNNYFSIGVDASIAHRFHLMR 693

  Fly   991 EAHPERFNSRLRNKMYYGQMGGKDLILRQYRNLSQWVTLECDGQDFTGKLRDAGCHAVLFLNIPS 1055
            |.|||:||||::||::|.:.|..:.|....:.|::.:.:||||  ....|.......:..|||||
Zfish   694 EKHPEKFNSRMKNKLWYFEFGTTETISATCKKLNETIEVECDG--IILDLSSTSLEGIAVLNIPS 756

  Fly  1056 YGGGTHPWNDS--------FGASKP-------------------SIDDGLMEVVGLT-TYQLPML 1092
            ..||::.|.::        .....|                   .:.|.|:|||||. ..::..:
Zfish   757 MHGGSNLWGETKKRRNYNRMSKKVPERMTGSTVTDAKELKFCVQDLSDQLLEVVGLEGAIEMGQI 821

  Fly  1093 QAGMH--GTCICQCRKARIITKRTIPMQVDGEACRVKPSVIEIELLNKALML 1142
            ..|:.  |..:.||....|.|.|.:|||:|||.....|..|.|...|:..||
Zfish   822 YTGLKSAGRRLAQCSNVTIRTSRLLPMQIDGEPWMQPPCTIRITHKNQVPML 873

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
rdgANP_001259366.1 C1_1 591..640 CDD:278556 11/51 (22%)
C1_1 661..725 CDD:278556 16/63 (25%)
LCB5 813..1140 CDD:224513 144/356 (40%)
DAGKc 814..942 CDD:214487 69/127 (54%)
DAGKa 969..1123 CDD:214486 61/183 (33%)
ANK 1329..1447 CDD:238125
ANK repeat 1329..1356 CDD:293786
Ank_2 1330..1425 CDD:289560
ANK repeat 1358..1391 CDD:293786
ANK repeat 1393..1425 CDD:293786
Ank_2 1399..>1459 CDD:289560
LOC567728XP_021334575.1 DAG_kinase_N 4..93 CDD:316983 15/74 (20%)
Herpes_BLLF1 <106..>237 CDD:330317 39/147 (27%)
EFh 258..327 CDD:238008 20/153 (13%)
C1 350..399 CDD:237996 11/52 (21%)
C1_1 415..466 CDD:278556 17/65 (26%)
DAGKc 530..651 CDD:214487 69/127 (54%)
DAGKa 672..854 CDD:214486 61/183 (33%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170590846
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000241
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
43.840

Return to query results.
Submit another query.