DRSC/TRiP Functional Genomics Resources

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Protein Alignment rdgA and CG31140

DIOPT Version :9

Sequence 1:NP_001259366.1 Gene:rdgA / 31826 FlyBaseID:FBgn0261549 Length:1462 Species:Drosophila melanogaster
Sequence 2:NP_001262893.1 Gene:CG31140 / 42836 FlyBaseID:FBgn0051140 Length:1571 Species:Drosophila melanogaster


Alignment Length:1452 Identity:340/1452 - (23%)
Similarity:514/1452 - (35%) Gaps:460/1452 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly     2 QQQQQPSIDQLPEPTASTSNSATTKPTIATATTSTTTTSGNNFHQQLQATTAATMQRLRTTFTRS 66
            |.:|...:...|.||:..|.|....||.::.|...|:..             |...|.|......
  Fly   264 QSKQHFLLSTPPTPTSCGSISLCHSPTPSSLTVGETSNE-------------AEQDRERDQDQPE 315

  Fly    67 RTPTGAEMKMQNSLEVPKQVRSASFDEMQLESQRASSSLLKQQSSSSASADERSSEAGFLQVPLA 131
            ..|.....:..::|::.....:...:..:..|..:|..||...........:|..:.|.....| 
  Fly   316 EEPEEENTEQDSALQLTTSTSNVIGNLQKWPSANSSLHLLYTNLFRKLGQGKRRRKRGISSGGL- 379

  Fly   132 AHQQRSHSFDSATASAG-SDDSGTFLEVPRRLKARRSSSTKTPPPCIHCHYLEEYERRMTAEQRY 195
                 |.|.|......| .|.||..|.                         ::|          
  Fly   380 -----SPSEDEDDVDGGVCDISGGDLS-------------------------DDY---------- 404

  Fly   196 FIDHRELTALSYSNTSSEASEDEDEVEGH-NAEEEEEGSAAIEDAEEETTEAATEEADEDPRTEV 259
              ||.:: ||...:..|....|..|.:.| :||.|.||.....::..||::...|..:.|     
  Fly   405 --DHCDV-ALRRRSLRSRQPRDVSETDYHGDAEAEAEGETVPRESCYETSDTGGELTNTD----- 461

  Fly   260 ESEHDHDPDDDAALEMDIRIGNMSQGSSIEESRARLP----RQMRRHTIGSSSVTSASEDEGLEG 320
                    |.|::|.:   |.|:|..||...:...:|    ....|:|..:|  |:|....|...
  Fly   462 --------DLDSSLNL---ISNLSYNSSNNSNACNVPGGATAPDARNTATTS--TTAPGKSGHAL 513

  Fly   321 SDNGSPHFGNTLLPPQPTTPCGITFTLSPTNGDYPSPPHLPLDPG---SPPI-----SPCSSNSG 377
            |..|...        ||.|  |....:.|.......|.|.....|   |.|:     |.|||.|.
  Fly   514 SVQGGRQ--------QPKT--GALAQIKPKPKPILMPKHKAQGKGGSLSSPLSNSNSSDCSSASP 568

  Fly   378 RLPALAPIISTPCSSADADDAGAAM---------GLPVRARRRS-ISRQEAIFVEPTGN-SLENV 431
            ..||....:| |...:.:....||:         |..:..|||| .|.:.|:.|....| ||:.:
  Fly   569 SAPATLLQLS-PVGRSKSFQESAAITAVSRYKKYGRGLFQRRRSKRSPKNAVGVGGKSNYSLDRL 632

  Fly   432 S--------------HEEVDNSNTKSS-VDTADSLDE---------------------ASTMATC 460
            |              |...||.:..:. :|..|..|:                     |..::..
  Fly   633 SQNIEITIQDEDGNFHPYDDNYHMLAGRLDATDVDDDVGFDDLYLDDRPSGASDDVAFAGDISDG 697

  Fly   461 GSPGAAGGSGASSSHHNAFVVRDIY--LMV----PDLKRDRAASVDSCFSKLSSNAKTEELQPSA 519
            |:...:..|.||..|....::|.:.  |.|    |..::.||.|:...||             |.
  Fly   698 GASSRSRASDASDGHVLGRLLRQVRQGLSVGWRKPRYQKRRARSISEEFS-------------SG 749

  Fly   520 DGCFLTVPNINATRSRSVDIVLPTDEQARYKALS--------------MTGSTVTYADGRTASAS 570
            |     .|...             ||::..||.|              ..|:..:.|.|.:|||:
  Fly   750 D-----TPRFK-------------DEESASKAESGHGPSSGGAGGGGGSGGAGGSSAAGASASAA 796

  Fly   571 NSRRPIRIVPDWTENAVQGEHYWKPTSASGDLCCLNE---------------ECIK--------S 612
            ..               ...|| :|.|.||.....:|               |.||        .
  Fly   797 GG---------------SSGHY-RPDSGSGHKSDKSEKDREKKEKEREEKDIEMIKVFDGNNSFR 845

  Fly   613 GQRMKCSACQ------------LVAHH-------------------------------NCIPFVN 634
            .|:.:....|            |.|.|                               |.:....
  Fly   846 RQQYRVIIVQRTYTLEQLLTTALRAFHITRDPQAFYLTDLYAPAGMEDTPMLDPTPVLNLVHLEG 910

  Fly   635 EKSTLACKPTYRDVGIRQYREQTTTHHHWVHRKLEKGKCKQCGKF------FP------MKQAVQ 687
            ::..:..:...||.|               |.::..||. ||...      .|      :|..::
  Fly   911 KRPAIYLRFHDRDRG---------------HVRVYPGKL-QCSMLEDPYVSVPVDNSTVIKDLIR 959

  Fly   688 SKL--FGSKEIVALACAWCHEI--YHNKEACFNQAKIGEECRLGNYAPIIVPPSWIVKLPTKGNF 748
            ..|  ||.::         ::|  |...|...::. :.|.....|..|      |.:   .|...
  Fly   960 DALDKFGLQD---------NQIQDYRCSEVLLDRG-VTERILSWNERP------WDI---MKQLG 1005

  Fly   749 KSSIR--------VSNKNNAASGSGGGGAGGGAGGGGGKSKKQTQRRQKGKEEK----------- 794
            |.|||        :.:|.:....:.....|....|...::.:|...:....|.|           
  Fly  1006 KDSIRQMELMRFYMQHKQDPHGPNIALFVGNLPTGLSQRNYEQILNKYVTDENKFISIGPIYYEY 1070

  Fly   795 -----------KEPRAFI-------------------VKP--IPSPEVIPVIVFINPKSGGNQGH 827
                       |..|||.                   ::|  :|| :|.|::||:|.||||.||.
  Fly  1071 GSVVLTFEDSMKAVRAFYNLRETIIEDKKLLVLLLPNIEPSMVPS-DVRPLLVFVNVKSGGCQGL 1134

  Fly   828 KLLGKFQHLLNPRQVFDLTQGGPKMG--------------------LDMFRKAPNLRVLACGGDG 872
            :|:..|:.||||.|||||..|||..|                    |.:||:..|.::|.|||||
  Fly  1135 ELISSFRKLLNPYQVFDLDNGGPLPGYVQPITVFVIRPLIFDSIISLYVFRQITNYKILVCGGDG 1199

  Fly   873 TVGWVLSVLDQI-QPPLQPAPAVGVLPLGTGNDLARALGWGGSIFFQGYT--DEPIGKILREIGM 934
            |:||||..||.: |.....:|...::||||||||||.|.||     .|||  ::|: .:||::..
  Fly  1200 TIGWVLQCLDNVGQDSECSSPPCAIVPLGTGNDLARVLCWG-----SGYTGGEDPL-NLLRDVIE 1258

  Fly   935 SQCVLMDRWRVKVTPNDDVTDDHVD---------RSKPNVPLNVINNYFSFGVDAHIALEFHEAR 990
            ::.:.:|||.|...|.|...:..:.         :::.|..:.|:||||..|:||.:.|:||.||
  Fly  1259 AEEIRLDRWTVVFHPEDKPEEPAMKAPSQTTGGAQNEDNSQIFVMNNYFGIGIDADLCLDFHNAR 1323

  Fly   991 EAHPERFNSRLRNKMYYGQMGGKDLILRQ-YRNLSQWVTLECDGQDFTGKLRDAGCHAVLFLNIP 1054
            |.:|.:||||||||.||.:||.:.::.|: .::|.:.:.||.||:.......|    .::.|||.
  Fly  1324 EENPNQFNSRLRNKGYYVKMGLRKIVGRKAVKDLQKELRLEVDGKIVELPPVD----GIIILNIL 1384

  Fly  1055 SYGGGTHPW----NDSFGASKPSIDDGLMEVVGLT-TYQLPMLQAGMHGTC-ICQCRKARIITKR 1113
            |:|.|.:||    :|.|  |.|:..||::||||:| ...|..:|:|:.... |.|....:|....
  Fly  1385 SWGSGANPWGPDKDDQF--STPNHYDGMLEVVGVTGVVHLGQIQSGIRTAMRIAQGGHIKIHLNT 1447

  Fly  1114 TIPMQVDGEACRVKP-SVIEIELLNKALMLSKRK-----------------------HGRGDVQV 1154
            .:|:|||||.....| .|:.::...||.||.|.|                       .|.|.:.|
  Fly  1448 DMPVQVDGEPWIQSPGDVVVLKSALKATMLKKTKSKRRLTEPHISPAVLSLSVAQQGSGSGSMSV 1512

  Fly  1155 --NPLEKMQLHILRVTMQQYEQ 1174
              :|..:.|..:.:...||.:|
  Fly  1513 SGSPQSQSQQQLQQQQQQQQQQ 1534

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
rdgANP_001259366.1 C1_1 591..640 CDD:278556 16/114 (14%)
C1_1 661..725 CDD:278556 14/79 (18%)
LCB5 813..1140 CDD:224513 137/366 (37%)
DAGKc 814..942 CDD:214487 62/150 (41%)
DAGKa 969..1123 CDD:214486 64/160 (40%)
ANK 1329..1447 CDD:238125
ANK repeat 1329..1356 CDD:293786
Ank_2 1330..1425 CDD:289560
ANK repeat 1358..1391 CDD:293786
ANK repeat 1393..1425 CDD:293786
Ank_2 1399..>1459 CDD:289560
CG31140NP_001262893.1 C1 6..55 CDD:237996
C1 69..116 CDD:197519
C1_1 135..185 CDD:278556
RA 833..922 CDD:279168 9/88 (10%)
UBQ 923..1022 CDD:294102 24/133 (18%)
RRM_SF 1032..1102 CDD:302621 9/69 (13%)
DAGKc 1121..1266 CDD:214487 62/150 (41%)
DAGK_acc 1302..1457 CDD:279003 64/160 (40%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45462332
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D17792at50557
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR11255
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
43.950

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