DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rnf11 and AT3G60080

DIOPT Version :10

Sequence 1:NP_726563.1 Gene:Rnf11 / 318246 FlyBaseID:FBgn0052850 Length:147 Species:Drosophila melanogaster
Sequence 2:NP_191567.1 Gene:AT3G60080 / 825178 AraportID:AT3G60080 Length:306 Species:Arabidopsis thaliana


Alignment Length:123 Identity:39/123 - (31%)
Similarity:54/123 - (43%) Gaps:12/123 - (9%)


- Green bases have known domain annotations that are detailed below.


  Fly    10 SDDISLLRGNDSQISGTQPVYHQGEHYQRELYPSTSSSTTLTPSSNNRQLSDENQVKIAKRIGLM 74
            |||..||   ||      |..|:   ..|.|....|.|::.:.||::..|...:.:.....|.:.
plant    99 SDDNFLL---DS------PYLHR---LLRHLASDNSGSSSSSSSSSSSSLLKSSDIDSIPTIQIS 151

  Fly    75 QYLPIGTYDGSSKKARECVICMAEFCVNEAVRYLPCMHIYHVNCIDDWLLRSLTCPSC 132
            ..|...|.|........|.:|..:|.:.|:.|.|||.||||.:||..||....:||.|
plant   152 SSLLCSTDDSDPDSVLLCAVCKEDFIIGESARRLPCSHIYHSDCIVPWLSDHNSCPLC 209

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rnf11NP_726563.1 RING-H2_RNF11 91..133 CDD:438131 19/42 (45%)
AT3G60080NP_191567.1 zinc_ribbon_9 18..57 CDD:433910
RING_Ubox 169..210 CDD:473075 19/41 (46%)
Blue background indicates that the domain is not in the aligned region.

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