DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG10962 and rdh8b

DIOPT Version :10

Sequence 1:NP_788887.1 Gene:CG10962 / 31824 FlyBaseID:FBgn0030073 Length:249 Species:Drosophila melanogaster
Sequence 2:NP_957082.2 Gene:rdh8b / 393761 ZFINID:ZDB-GENE-040426-1759 Length:317 Species:Danio rerio


Alignment Length:234 Identity:62/234 - (26%)
Similarity:98/234 - (41%) Gaps:53/234 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly     7 RVAVISGASSGIGAACARLLVAAGLQVVGLARRTDRLEQLRQSLPAEQRMRFHQHK--------- 62
            :|.:|:|.|||||              :|:|....|.:|.|..:.|..|....|.|         
Zfish     7 KVVLITGCSSGIG--------------LGIAVMLARDKQQRYYVIATMRDLKRQDKLVCAAGDTY 57

  Fly    63 ------C--DVSQELQVDTAFEWIEKELGGIDVLINNAGIVLGGQLIDMPTKDINNILQTNLMGS 119
                  |  ||.....|....:.::..  .||:||||||:.|.|.:..:...|:..:.:||..|:
Zfish    58 GKTLTVCTLDVCSNESVRQCVDSVKDR--HIDILINNAGVGLVGPVEGLSLDDMMKVFETNFFGA 120

  Fly   120 IYCTKLAASSMRRRQVAGHLIFVNSTAGVAGYKPDPADESLNAYTPSKFALTAVQEICRQELINQ 184
            :...|.....|::|: :||:|.::|..|:.|...:      :.|..||||:....|....:|:. 
Zfish   121 VRMIKEVMPDMKKRR-SGHIIVISSVMGLQGVAFN------DVYAASKFAIEGFCESLAVQLLK- 177

  Fly   185 GSKIKTTSINPGWVATEIVPDETKAKLGEVILQADDVAQ 223
             ..:..:.|.||.|.||.   |.|        ..|||::
Zfish   178 -FNVTMSMIEPGPVHTEF---EMK--------MYDDVSK 204

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG10962NP_788887.1 YdfG 5..245 CDD:443365 62/234 (26%)
rdh8bNP_957082.2 type1_17beta-HSD-like_SDR_c 7..264 CDD:187666 62/234 (26%)

Return to query results.
Submit another query.