DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG10962 and rdh8a

DIOPT Version :10

Sequence 1:NP_788887.1 Gene:CG10962 / 31824 FlyBaseID:FBgn0030073 Length:249 Species:Drosophila melanogaster
Sequence 2:NP_957001.1 Gene:rdh8a / 280648 ZFINID:ZDB-GENE-021115-3 Length:318 Species:Danio rerio


Alignment Length:205 Identity:59/205 - (28%)
Similarity:94/205 - (45%) Gaps:17/205 - (8%)


- Green bases have known domain annotations that are detailed below.


  Fly     7 RVAVISGASSGIGAACARLLV---AAGLQVVGLARRTDRLEQLRQSLPAEQRMRFHQHKCDVSQE 68
            :|.:|:|.|||||...|.||.   .....|:...|...:.::|.::..............|:..:
Zfish     8 KVVLITGCSSGIGLRIAVLLARDEQKRYHVIATMRDLKKKDRLVEAAGEVYGQTLTLLPLDICSD 72

  Fly    69 LQVDTAFEWIEKELGGIDVLINNAGIVLGGQLIDMPTKDINNILQTNLMGSIYCTKLAASSMRRR 133
            ..|......::..  .|||||||||:.|.|.:..:...::..:.:||..|::...|.....|::|
Zfish    73 ESVRQCVNSVKDR--HIDVLINNAGVGLLGPVESISMDEMKRVFETNFFGTVRMIKEVMPDMKKR 135

  Fly   134 QVAGHLIFVNSTAGVAGYKPDPADESLNAYTPSKFALTAVQEICRQELINQGSKIKTTSINPGWV 198
            | |||:|.::|..|:.|...:      :.||.||||:....|....:|:.  ..:|.:.|.||.|
Zfish   136 Q-AGHIIIMSSVMGLQGVVFN------DVYTASKFAIEGFCESMAVQLLK--FNVKLSLIEPGPV 191

  Fly   199 ATEIVPDETK 208
            .||.   |||
Zfish   192 HTEF---ETK 198

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG10962NP_788887.1 YdfG 5..245 CDD:443365 59/205 (29%)
rdh8aNP_957001.1 type1_17beta-HSD-like_SDR_c 8..265 CDD:187666 59/205 (29%)

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