DRSC/TRiP Functional Genomics Resources

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Protein Alignment Sdic3 and LOC798868

DIOPT Version :9

Sequence 1:NP_001285482.2 Gene:Sdic3 / 318231 FlyBaseID:FBgn0052823 Length:533 Species:Drosophila melanogaster
Sequence 2:XP_021326617.1 Gene:LOC798868 / 798868 -ID:- Length:608 Species:Danio rerio


Alignment Length:528 Identity:272/528 - (51%)
Similarity:367/528 - (69%) Gaps:44/528 - (8%)


- Green bases have known domain annotations that are detailed below.


  Fly    17 SGGKKQPLNLSVYNVQATNIPPKETLVYTKQTQTTSTGGGNGDVLAFDAQGDDEESSLQNLGNGF 81
            :.|:::...|....:...:..|:|.:.|.|:|||.:.        |..::.|:||..        
Zfish   101 AAGRRRSHRLGPSKITQVDFLPREVVSYCKETQTPNA--------AHHSEEDEEEDE-------- 149

  Fly    82 TSKLPPGYLTHGLPTVKDVAPAITPLEIKKETEVKKE--VNELSEEQKQMIILSENFQRFVVRAG 144
                         ...:..|...|.|:.::|::..||  ..||:||:||.::.||.|..|..|:.
Zfish   150 -------------EVTEPKAGPETDLQEEEESKDTKEGHPRELTEEEKQQVLHSEEFLIFFDRSI 201

  Fly   145 RVIERALSENVDIYTDYIGGGDSEEANDERSHARLSLNRVFYDERWSKNRCITSMDWSTHFPELV 209
            ||:||||:|:.:|:.||.|....::..|.:..:.|||:|:||||.|||:|.||.:|||..:|||:
Zfish   202 RVMERALAEDSNIFFDYSGRDLEDKEGDMQGGSSLSLSRLFYDEHWSKHRVITCLDWSPQYPELL 266

  Fly   210 VGSYHNNEESPNEPDGVVMVWNTKFKKSTPEDVFHCQSAVMSTCFAKFNPNLILGGTYSGQIVLW 274
            |.||:|||::|:|||||.:|||.||||:|||.::||||.|:|..||.|:|||::|||||||||||
Zfish   267 VASYNNNEDAPHEPDGVALVWNMKFKKTTPEYIYHCQSPVVSVGFALFHPNLLVGGTYSGQIVLW 331

  Fly   275 DNRVQKRTPIQRTPLSAAAHTHPVYCLQMVGTQNAHNVISISSDGKLCSWSLDMLSQPQDTLELQ 339
            |||..:|||:||||||||||||||||:.:||||||:|:|::|:||::||||||||||||:::||.
Zfish   332 DNRSHRRTPVQRTPLSAAAHTHPVYCVNVVGTQNANNLITVSTDGRMCSWSLDMLSQPQESMELV 396

  Fly   340 QRQSKAIAITSMAFPANEINSLVMGSEDGYVYSASRHGLRSGVNEVYERHLGPITGISTHYNQLS 404
            ..:||.:|:|.||||..::|:.::|||:|.||:|||||.::|:.|::|.|.||:||||.| :.:.
Zfish   397 YNKSKPVAVTGMAFPTGDVNNYIVGSEEGTVYTASRHGSKAGICEMFEGHQGPVTGISCH-SAVG 460

  Fly   405 P-DFGHLFLTSSIDWTIKLWSLKDTKPLYSFEDNSDYVMDVAWSPVHPALFAAVDGSGRLDLWNL 468
            | ||.|||:|||.|||:||||.|..|||||||||:|||.||.||||||:|||||||.||||||||
Zfish   461 PVDFSHLFVTSSFDWTVKLWSTKQNKPLYSFEDNADYVYDVMWSPVHPSLFAAVDGMGRLDLWNL 525

  Fly   469 NQDTEVPIASIVVAGAPALNRVSWTPSGLHVCIGDEAGKLYVYDVAENLAQPSRD---------- 523
            |.|||||.||:.|.||||||||.|...|..|.:||..|::::|||.| ||.|..|          
Zfish   526 NNDTEVPSASVTVEGAPALNRVRWASGGREVAVGDSEGRVWIYDVGE-LAVPHADDWTRFGRTLM 589

  Fly   524 EIKMNQSD 531
            ||:.|:.|
Zfish   590 EIRANRGD 597

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Sdic3NP_001285482.2 Dynein_IC2 23..51 CDD:288403 7/27 (26%)
NtpH 108..>178 CDD:225368 26/71 (37%)
WD40 196..512 CDD:295369 206/316 (65%)
WD40 repeat 196..245 CDD:293791 30/48 (63%)
WD40 <224..523 CDD:225201 196/299 (66%)
WD40 repeat 251..289 CDD:293791 27/37 (73%)
WD40 repeat 298..337 CDD:293791 26/38 (68%)
WD40 repeat 349..435 CDD:293791 50/86 (58%)
WD40 repeat 441..479 CDD:293791 31/37 (84%)
WD40 repeat 487..513 CDD:293791 11/25 (44%)
LOC798868XP_021326617.1 Dynein_IC2 109..135 CDD:314442 7/25 (28%)
WD40 246..569 CDD:330360 210/323 (65%)
WD40 repeat 253..302 CDD:293791 30/48 (63%)
WD40 repeat 308..346 CDD:293791 27/37 (73%)
WD40 repeat 355..398 CDD:293791 28/42 (67%)
WD40 repeat 406..452 CDD:293791 23/45 (51%)
WD40 repeat 459..492 CDD:293791 22/32 (69%)
WD40 repeat 498..539 CDD:293791 32/40 (80%)
WD40 repeat 544..568 CDD:293791 10/23 (43%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1453532at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
11.010

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